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Functions1,523 in github.com/derrynknife/SurPyval

↓ 1 callersMethod_phi_param_map
(self, Z)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:46
↓ 1 callersFunction_power_law_times
(T=100.0, n=20, beta=2.5)
surpyval/tests/recurrent/test_trend_tests.py:36
↓ 1 callersFunction_resolve_truncation
Normalise the observation-time argument into a ``{system_id: T}`` mapping, or ``None`` to signal failure-truncated data (each system observed
surpyval/recurrent/tests.py:127
↓ 1 callersMethod_resolve_virtual_age_function
(self, kijima_type)
surpyval/recurrent/renewal/generalized_renewal.py:79
↓ 1 callersFunction_scale
(ll, n, scale)
surpyval/utils/__init__.py:995
↓ 1 callersMethod_split_to_observation_types
(self)
surpyval/utils/surpyval_data.py:145
↓ 1 callersFunction_trend_from_sign
(u: float)
surpyval/recurrent/tests.py:414
↓ 1 callersMethod_trunc_logmass
Log copula mass over the per-row truncation rectangle.
surpyval/multivariate/parametric/copula/copula.py:179
↓ 1 callersMethod_validate_fit_inputs
( self, surv_data, how, offset, lfp, zi, fixed,
surpyval/univariate/parametric/parametric_fitter.py:305
↓ 1 callersFunctionadd_to_funcs
(low, upp, i, funcs, inv_f)
surpyval/univariate/parametric/fitters/__init__.py:56
↓ 1 callersFunctionadj_relu
(x)
surpyval/univariate/parametric/fitters/__init__.py:40
↓ 1 callersMethodaic
r""" The the Aikake Information Criterion (AIC) for the model, if it was fit with the ``fit()`` method. Not available if fit with the
surpyval/univariate/regression/parametric_regression_model.py:481
↓ 1 callersMethodbaseline
( self, beta, x, c, n, Z )
surpyval/univariate/regression/proportional_hazards/cox_ph.py:149
↓ 1 callersMethodbic
r""" The Bayesian Information Criterion (BIC) for the model, if it was fit with the ``fit()`` method. Not available if fit with the
surpyval/univariate/parametric/parametric.py:1006
↓ 1 callersMethodcb
r""" Confidence bounds of the ``on`` function at the ``alpha_ci`` level of significance. Can be the upper, lower, or two-side
surpyval/univariate/nonparametric/nonparametric.py:254
↓ 1 callersFunctioncheck_c_and_e
(c, e)
surpyval/utils/__init__.py:1036
↓ 1 callersFunctioncheck_left_or_int_cens
(c)
surpyval/utils/__init__.py:1017
↓ 1 callersMethodconditional_cdf
``P(X_other <= x_other | X_d = x_d)`` -- the copula h-function.
surpyval/multivariate/parametric/copula/copula_model.py:63
↓ 1 callersMethodcreate
Create a Proportional Hazards fitter for the given distribution using exp(beta'Z) as the hazard multiplier. Parameters
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:122
↓ 1 callersMethodcreate_general_log_linear_fitter
(cls, name, distribution)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:143
↓ 1 callersMethodcreate_negll_func
(self, data)
surpyval/recurrent/parametric/hpp.py:131
↓ 1 callersMethodcreate_negll_func
(self, data)
surpyval/recurrent/parametric/nhpp_fitter.py:13
↓ 1 callersMethodcreate_negll_func
(self, data)
surpyval/recurrent/regression/hpp_proportional_intensity.py:68
↓ 1 callersMethodcreate_negll_func
(self, data, dist)
surpyval/recurrent/regression/nhpp_proportional_intensity.py:75
↓ 1 callersMethodcreate_negll_func
(self, data, dist, kijima="i")
surpyval/recurrent/renewal/generalized_renewal.py:118
↓ 1 callersMethodcreate_negll_func
(self, x, i, c, n, dist)
surpyval/recurrent/renewal/generalized_one_renewal.py:90
↓ 1 callersMethodcreate_negll_func
(self, data, dist, m)
surpyval/recurrent/renewal/ari.py:122
↓ 1 callersFunctiondesign_matrix_from_df
Build a covariate design matrix ``Z`` from a pandas DataFrame. Exactly one of ``Z_cols`` or ``formula`` must be provided. Parameters
surpyval/univariate/regression/regression_data.py:23
↓ 1 callersMethoddf
The probability density function of the fitted model. Parameters ---------- x : array like The values a
surpyval/univariate/parametric/mixture_model.py:246
↓ 1 callersMethoddf
r""" Failure (CDF or unreliability) function for the Logistic Distribution: .. math:: f(x) = \\frac{e^{-\\left ( x - \\m
surpyval/univariate/parametric/distributions/logistic.py:99
↓ 1 callersMethoddf
r""" Density function for the LogNormal Distribution: .. math:: f(x) = \frac{1}{x \sigma \sqrt{2\pi}}e^{-\frac{1}{2}\lef
surpyval/univariate/parametric/distributions/lognormal.py:154
↓ 1 callersMethoddf
r""" Failure (CDF or unreliability) function for the Uniform Distribution: .. math:: f(x) = \frac{1}{b - a} Par
surpyval/univariate/parametric/distributions/uniform.py:131
↓ 1 callersMethoddf
r""" Density function for the Beta Distribution: .. math:: f(x) = \frac{x^{\alpha-1}\left(1 - x \right )^{\beta-1}}{B \l
surpyval/univariate/parametric/distributions/beta.py:136
↓ 1 callersMethoddf
r""" Density function for the LogLogistic Distribution: .. math:: f(x) = \frac{\left ( \beta / \alpha \right ) \left ( x
surpyval/univariate/parametric/distributions/loglogistic.py:136
↓ 1 callersMethoddf
r""" Density function for the Gamma Distribution: .. math:: f(x) = \frac{\beta^{\alpha }}{\Gamma \left ( \alpha \right )
surpyval/univariate/parametric/distributions/gamma.py:162
↓ 1 callersMethoddf
r""" Probability mass function for the Binomial distribution: .. math:: P(X = x) = \binom{n}{x} p^{x} (1 - p)^{n - x}
surpyval/univariate/parametric/distributions/binomial.py:41
↓ 1 callersMethoddf
r""" Density function for the four-parameter Beta distribution: .. math:: f(x) = \frac{\left(x - a\right)^{\alpha - 1}
surpyval/univariate/parametric/distributions/beta4.py:191
↓ 1 callersMethoddf
r""" Density function (pdf) for the Gumbel LEV Distribution: .. math:: f(x) = \frac{1}{\sigma}e^{-\left (\frac{x - \mu}{
surpyval/univariate/parametric/distributions/gumbel_lev.py:106
↓ 1 callersFunctiondfs_assert_trees_equal
( surv_curr_node, sksurv_curr_node: int, )
surpyval/tests/experimental/forest/test_tree.py:147
↓ 1 callersMethoddu
(self, u, v, rho)
surpyval/multivariate/parametric/copula/elliptical.py:38
↓ 1 callersMethoddu
(self, u, v, theta)
surpyval/multivariate/parametric/copula/archimedean.py:74
↓ 1 callersFunctionefron_hess_jit
(n_d, Ri, ZRi, Z2Ri, Di, ZDi, Z2Di, out)
surpyval/univariate/regression/proportional_hazards/cox_ph.py:111
↓ 1 callersFunctionefron_jac
(n_d, Ri, ZRi, Di, ZDi, masked_array)
surpyval/univariate/regression/proportional_hazards/cox_ph.py:90
↓ 1 callersFunctionefron_jit
(n_d, Ri, Di, out)
surpyval/univariate/regression/proportional_hazards/cox_ph.py:65
↓ 1 callersMethodexpectation
(self)
surpyval/univariate/parametric/mixture_model.py:97
↓ 1 callersMethodff
r""" Failure (CDF or unreliability) function for the Weibull Distribution: .. math:: F(x) = 1 - e^{-\left ( \frac{x}{\al
surpyval/univariate/parametric/distributions/weibull.py:63
↓ 1 callersMethodff
r""" Failure (CDF or unreliability) function for the Bernoulli Distribution: .. math:: F(x) = p Parameters
surpyval/univariate/parametric/distributions/bernoulli.py:54
↓ 1 callersMethodff
r""" Failure (CDF or unreliability) function for the Uniform Distribution: .. math:: F(x) = \frac{x - a}{b - a}
surpyval/univariate/parametric/distributions/uniform.py:93
↓ 1 callersMethodff
r""" CDF (or unreliability or failure) function for the Gamma Distribution: .. math:: F(x) = \frac{\gamma \left ( \alpha
surpyval/univariate/parametric/distributions/gamma.py:125
↓ 1 callersMethodff
r""" CDF (or unreliability or failure) function for the Normal Distribution: .. math:: F(x) = \Phi \left( \frac{x - \mu}
surpyval/univariate/parametric/distributions/normal.py:122
↓ 1 callersMethodff
r""" CDF (or Failure) function for the Gumbel LEV Distribution: .. math:: F(x) = e^{-e^{-\left ( x - \mu \right )/\sigma
surpyval/univariate/parametric/distributions/gumbel_lev.py:66
↓ 1 callersMethodff
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:47
↓ 1 callersMethodff
(self, x, Z, *params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:75
↓ 1 callersMethodff
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:130
↓ 1 callersMethodff
(self, x)
surpyval/experimental/parallel.py:27
↓ 1 callersFunctionfh_h
(r_i, d_i)
surpyval/univariate/nonparametric/fleming_harrington.py:8
↓ 1 callersFunctionfh_var_h
(r_i, d_i)
surpyval/univariate/nonparametric/fleming_harrington.py:18
↓ 1 callersMethodfit
The central feature to SurPyval's capability. This function aimed to have an API to mimic the simplicity of the scipy API. That is,
surpyval/univariate/parametric/parametric_fitter.py:445
↓ 1 callersMethodfit
Need to check that causes is the same length TODO: FlemingHarrington baseline.
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:98
↓ 1 callersMethodfit
Fit the generalized renewal model. Parameters ---------- x : array_like An array of event times.
surpyval/recurrent/renewal/generalized_one_renewal.py:213
↓ 1 callersMethodfit
( cls, x: ArrayLike, Z: ArrayLike | NDArray, c: ArrayLike, n: ArrayLik
surpyval/experimental/forest/tree.py:54
↓ 1 callersMethodfit_from_ecdf
(self, x: npt.ArrayLike, F: npt.ArrayLike)
surpyval/univariate/parametric/parametric_fitter.py:764
↓ 1 callersMethodfit_from_recurrent_data
(self, data)
surpyval/recurrent/nonparametric/mcf.py:119
↓ 1 callersMethodfit_from_recurrent_data
Fits the HPP model to recurrent data and returns the fitted model. Parameters ---------- data : object A
surpyval/recurrent/parametric/hpp.py:243
↓ 1 callersMethodfit_from_recurrent_data
Fit the NHPP model from recurrent data using either Maximum Likelihood Estimation (MLE) or Mean Square Error (MSE) methods.
surpyval/recurrent/parametric/nhpp_fitter.py:106
↓ 1 callersMethodfit_from_recurrent_data
(cls, data)
surpyval/recurrent/competing_risks/nonparametric/cause_specific_mcf.py:71
↓ 1 callersMethodfit_from_recurrent_data
(self, data, dist, init=None)
surpyval/recurrent/regression/nhpp_proportional_intensity.py:200
↓ 1 callersMethodfit_from_recurrent_data
Fit the generalized renewal model from recurrent data. Parameters ---------- data : RecurrentData Data
surpyval/recurrent/renewal/generalized_renewal.py:173
↓ 1 callersMethodfit_from_recurrent_data
Fit the generalized renewal model from recurrent data. Parameters ---------- data : RecurrentData Data
surpyval/recurrent/renewal/generalized_one_renewal.py:135
↓ 1 callersFunctionfleming_harrington
(r, d)
surpyval/univariate/nonparametric/fleming_harrington.py:48
↓ 1 callersMethodfrom_params
Build a :class:`CopulaModel` from a known parameter and margins.
surpyval/multivariate/parametric/copula/copula.py:270
↓ 1 callersMethodfrom_xrd
r""" The central feature to SurPyval's capability. This function aimed to have an API to mimic the simplicity of the scipy API. That i
surpyval/univariate/nonparametric/nonparametric_fitter.py:178
↓ 1 callersFunctionfun
( params, offset=False, lfp=False, zi=False, transform=True, g
surpyval/univariate/parametric/fitters/mle.py:42
↓ 1 callersMethodget_plot_data
(self, **kwargs)
surpyval/univariate/nonparametric/nonparametric.py:1093
↓ 1 callersMethodget_plot_data
(self, heuristic="Nelson-Aalen")
surpyval/univariate/parametric/mixture_model.py:330
↓ 1 callersMethodget_plot_data
A method to gather plot data Parameters ---------- heuristic : {'Blom', 'Median', 'ECDF', 'Modal', 'Midpoint', 'Me
surpyval/univariate/parametric/parametric.py:1106
↓ 1 callersMethodget_times_to_first_events
Get the times to the first events for each item or subject. In the estimation of recurrent or renewal events it can be helpful to kno
surpyval/utils/recurrent_event_data.py:320
↓ 1 callersMethodhf
r""" Instantaneous hazard function with the non-parametric estimates from the data. This is calculated using simply the diffe
surpyval/univariate/nonparametric/nonparametric.py:140
↓ 1 callersMethodhf
r""" The instantaneous hazard function for a distribution using the parameters found in the ``.params`` attribute. Parameters
surpyval/univariate/parametric/parametric.py:436
↓ 1 callersMethodhf
(self, x, T)
surpyval/univariate/parametric/distributions/exact_event_time.py:34
↓ 1 callersMethodhf
(self, x, event=None)
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:53
↓ 1 callersMethodhf
( self, x: npt.ArrayLike, Z: "npt.ArrayLike | pd.DataFrame" )
surpyval/univariate/regression/semi_parametric_regression_model.py:65
↓ 1 callersMethodinitialise_params
(self)
surpyval/univariate/parametric/mixture_model.py:130
↓ 1 callersFunctioninterval_censor
(x, n=100)
surpyval/tests/univariate/parametric/test_fit.py:119
↓ 1 callersFunctioninv_adj_relu
(x)
surpyval/univariate/parametric/fitters/__init__.py:44
↓ 1 callersMethodinv_cif
Inverse of the cumulative intensity function (CIF) of the HPP model. Parameters ---------- cif : array_like
surpyval/recurrent/parametric/hpp.py:113
↓ 1 callersMethodinv_cif
(self, x)
surpyval/recurrent/parametric/parametric_recurrence.py:130
↓ 1 callersMethodinv_cif
(self, x, Z)
surpyval/recurrent/regression/proportional_intensity.py:93
↓ 1 callersFunctioninv_rev_adj_relu
(x)
surpyval/univariate/parametric/fitters/__init__.py:52
↓ 1 callersFunctionkaplan_meier
(r, d)
surpyval/univariate/nonparametric/kaplan_meier.py:24
↓ 1 callersMethodkendall_tau
(self, theta)
surpyval/multivariate/parametric/copula/archimedean.py:136
↓ 1 callersFunctionkijima_ii_from_prev_interarrival
Takes the interarrival times from the previous event for a given item and returns the virtual age for each interarrival time. Assumes th
surpyval/recurrent/renewal/generalized_renewal.py:15
↓ 1 callersMethodll_left_censored
(self, x, n, *params)
surpyval/univariate/parametric/parametric_fitter.py:185
↓ 1 callersMethodll_observed
(self, x, n, *params)
surpyval/univariate/parametric/parametric_fitter.py:154
↓ 1 callersMethodll_right_censored
(self, x, n, *params)
surpyval/univariate/parametric/parametric_fitter.py:175
↓ 1 callersMethodlog_df
(self, x, *params)
surpyval/univariate/parametric/parametric_fitter.py:137
↓ 1 callersMethodlog_df
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:86
↓ 1 callersMethodlog_df
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:73
↓ 1 callersMethodlog_ff
(self, x, *params)
surpyval/univariate/parametric/parametric_fitter.py:143
↓ 1 callersMethodlog_ff
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:83
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