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github.com/deepchem/torchchem
/ types & classes
Types & classes
34 in github.com/deepchem/torchchem
⨍
Functions
169
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Types & classes
34
↓ 4 callers
Class
LayerNorm
Construct a layernorm module (See citation for details).
torchchem/models/transformer.py:169
↓ 3 callers
Class
MolDataset
torchchem/data/mol_dataset.py:19
↓ 3 callers
Class
MolDataset
Class that represents a train/validation/test dataset that's readable for PyTorch Note that this class inherits torch.utils.data.Dataset
torchchem/models/data_utils.py:216
↓ 3 callers
Class
ScaleNorm
ScaleNorm
torchchem/models/transformer.py:184
↓ 2 callers
Class
ElemNet
contrib/ElemNet/model.py:6
↓ 2 callers
Class
MolDQN
contrib/MolDQN/dqn.py:6
↓ 1 callers
Class
Agent
contrib/MolDQN/agent.py:47
↓ 1 callers
Class
Edge
Describes an attributed edge in an undirected graph
torchchem/feat/neural_fp.py:331
↓ 1 callers
Class
EdgeFeaturesLayer
torchchem/models/transformer.py:242
↓ 1 callers
Class
Embeddings
torchchem/models/transformer.py:447
↓ 1 callers
Class
Encoder
Core encoder is a stack of N layers
torchchem/models/transformer.py:154
↓ 1 callers
Class
EncoderLayer
Encoder is made up of self-attn and feed forward (defined below)
torchchem/models/transformer.py:218
↓ 1 callers
Class
Generator
Define standard linear + softmax generation step.
torchchem/models/transformer.py:89
↓ 1 callers
Class
Graph
Describes an undirected graph class
torchchem/feat/neural_fp.py:23
↓ 1 callers
Class
GraphTransformer
torchchem/models/transformer.py:67
↓ 1 callers
Class
MolDatum
Class that represents a train/validation/test datum - self.label: 0 neg, 1 pos -1 missing for different target.
torchchem/models/data_utils.py:189
↓ 1 callers
Class
MultiHeadedAttention
torchchem/models/transformer.py:308
↓ 1 callers
Class
MultitaskClassification
torchchem/models/multitask_classification.py:11
↓ 1 callers
Class
MultitaskRegression
torchchem/models/multitask_regression.py:10
↓ 1 callers
Class
Node
Describes an attributed node in an undirected graph
torchchem/feat/neural_fp.py:315
↓ 1 callers
Class
PositionwiseFeedForward
Implements FFN equation.
torchchem/models/transformer.py:407
↓ 1 callers
Class
QEDRewardMolecule
The molecule whose reward is the QED.
contrib/MolDQN/agent.py:16
↓ 1 callers
Class
Result
A namedtuple defines the result of a step for the molecule class. The namedtuple contains the following fields: state: Chem.RWMol. The mole
contrib/MolDQN/environment.py:39
↓ 1 callers
Class
SublayerConnection
A residual connection followed by a layer norm. Note for code simplicity the norm is first as opposed to last.
torchchem/models/transformer.py:198
↓ 1 callers
Class
WeightedBCEWithLogits
torchchem/models/graphconv.py:538
Class
GraphConvolutionModel
torchchem/models/graphconv.py:621
Class
GraphConvolutionNet
torchchem/models/graphconv.py:552
Class
Model
Abstract base class for different ML models.
torchchem/models/model.py:13
Class
Molecule
Defines the Markov decision process of generating a molecule.
contrib/MolDQN/environment.py:310
Class
MultitaskModel
torchchem/models/model.py:131
Class
PositionGenerator
Define standard linear + softmax generation step.
torchchem/models/transformer.py:131
Class
TestMAT
torchchem/models/tests/test_mat.py:8
Class
TestMultitaskClassification
torchchem/models/tests/test_multitask.py:6
Class
TestNeuralFp
torchchem/feat/tests/test_neural_fp.py:10