(self, hierarchy)

(code)

(query_target_rank, num_of_nn)

(filenames)

()

(ref_idx, seed_idx, query_to_targets, embedding_matrix, num_of_neighbor)

(query_to_targets, embedding_matrix, num_of_neighbor)

(cui_to_idx, embedding_matrix, num_of_neighbor, f)

(self, code)

()

(concept_filename, cui_to_idx)

()

(cui_to_idx)

(filename)

(self, code)

(self, depth, code, descr=None)

(self, child)

(filenames, num_of_nn, concept_file, num_of_cores)

(filenames_type)

(icd9_set)

(filenames_type, num_of_neighbor, type='f')

()

()

(concept_filename, cui_to_idx)

(idx_to_cui, embedding_matrix, drug_pairs, search_indices, query_to_targets_cui, num_of_neighbor, display=Fals

(icd9_set)

()

(self, depth, code, descr)

(self, allcodes)

(filename)

(filename)

(self)

(self, codesfname)

(self)

(filenames)

(filename1, filename2, num_of_nn)

(filenames, num_of_nn)

(filenames, concept_filename, num_of_nn)

(filename1, filename2, num_of_nn, concept_file)

(result_q, pidx, n1, n2, ref_seed_list, query_to_targets, embedding_matrix, num_of_nn)

(self)

(idx_pair)

(idx_pair)

(idx_vector_pair)

(idx_vector_pair)

(self)

(query_target_rank, idx_to_cui, seed_pair=None)

(ref_idx, seed_idx, query_idx, target_indices, embedding_matrix, num_of_neighbor)

(query_idx, target_indices, embedding_matrix, num_of_neighbor)

(self)

(self, depth)

(self)

(CUI)

(self)

(self)