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github.com/chhylp123/hifiasm
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Functions
3,192 in github.com/chhylp123/hifiasm
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Functions
3,192
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Types & classes
18
↓ 2 callers
Function
destroy_dedup_idx_t
Overlaps.cpp:21402
↓ 2 callers
Function
destroy_mc_poy_t
rcut.cpp:3921
↓ 2 callers
Function
detect_exact_ovec
Overlaps.cpp:9729
↓ 2 callers
Function
detect_single_path_with_dels_by_length
Overlaps.cpp:27133
↓ 2 callers
Function
detect_single_path_with_dels_contigLen_complex
Overlaps.cpp:6010
↓ 2 callers
Function
detect_sysm_graph_bin
inter.cpp:12521
↓ 2 callers
Function
determine_bub_idx
hic.cpp:7254
↓ 2 callers
Function
dis_check_integer_aln_t
gfa_ut.cpp:4453
↓ 2 callers
Function
discard_small_ctg
Overlaps.cpp:20977
↓ 2 callers
Function
drenew_UL_reovlps
inter.cpp:21561
↓ 2 callers
Function
dump_kv_u_trans_t
rcut.cpp:4604
↓ 2 callers
Function
dump_linear_chain
inter.cpp:13833
↓ 2 callers
Function
dup_paf_check
gfa_ut.cpp:17065
↓ 2 callers
Function
ed_band_cal_extension_64_0_w_trace
Levenshtein_distance.h:3512
↓ 2 callers
Function
ed_band_cal_extension_64_1_w_trace
Levenshtein_distance.h:3620
↓ 2 callers
Function
ed_band_cal_extension_infi_0_w_trace
Levenshtein_distance.h:2694
↓ 2 callers
Function
ed_band_cal_extension_infi_1_w_trace
Levenshtein_distance.h:2823
↓ 2 callers
Function
ed_band_cal_global_64_w_trace
Levenshtein_distance.h:3370
↓ 2 callers
Function
ed_band_cal_global_infi_w_trace
Levenshtein_distance.h:2516
↓ 2 callers
Function
ed_band_cal_semi_infi_w_absent_diag_trace
Levenshtein_distance.h:3020
↓ 2 callers
Function
ed_non_retrieve_cut
Correct.cpp:13115
↓ 2 callers
Function
encode_score
Purge_Dups.cpp:3617
↓ 2 callers
Function
exchange_kv_u_trans_t
hic.cpp:17524
↓ 2 callers
Function
explore_graph
Overlaps.cpp:27495
↓ 2 callers
Function
extend_batch
inter.cpp:11709
↓ 2 callers
Function
extract_contain_tig
inter.cpp:18389
↓ 2 callers
Function
extract_exact_cigar
Correct.cpp:16805
↓ 2 callers
Function
extract_nccov
inter.cpp:17773
↓ 2 callers
Function
extract_path
POA.h:667
↓ 2 callers
Function
extract_subov
[ts, te) -> this is the reverse coordinates of t, not the original coordinates of t
Correct.cpp:22896
↓ 2 callers
Function
extract_subov_cigar
[ts, te) -> this is the reverse coordinates of t, not the original coordinates of t
Correct.cpp:24637
↓ 2 callers
Function
extract_xcoordates
Correct.cpp:20839
↓ 2 callers
Function
extract_xcoordates0
Correct.cpp:20780
↓ 2 callers
Function
fetch_aux_ovlp
ecovlp.cpp:257
↓ 2 callers
Function
ff_lunalign
Correct.cpp:25554
↓ 2 callers
Function
ff_tend
Correct.cpp:25466
↓ 2 callers
Function
fill_ctg_path_trans_idx
inter.cpp:18909
↓ 2 callers
Function
fill_utg_distance_multi
hic.cpp:3968
↓ 2 callers
Function
filter_by_reliable_ovlp0
inter.cpp:9578
↓ 2 callers
Function
filter_hap_overlaps_by_length
Purge_Dups.cpp:3496
↓ 2 callers
Function
filter_secondary_chain
Purge_Dups.cpp:2898
↓ 2 callers
Function
filter_snp
Correct.h:285
↓ 2 callers
Function
find_bubble_tangle
hic.cpp:8185
↓ 2 callers
Function
flip_block
hic.cpp:11759
↓ 2 callers
Function
flip_paf_rc
ecovlp.cpp:3845
↓ 2 callers
Function
fusion_chain_ovlp
Correct.cpp:16616
↓ 2 callers
Function
g_adjacent_dis_mul
inter.cpp:15780
↓ 2 callers
Function
gen_UL_reovlps
inter.cpp:21537
↓ 2 callers
Function
gen_backtrace
Correct.cpp:3693
↓ 2 callers
Function
gen_contain_ov
Correct.cpp:22546
↓ 2 callers
Function
gen_contig_path
inter.cpp:21914
↓ 2 callers
Function
gen_contig_self
inter.cpp:21941
↓ 2 callers
Function
gen_contig_trans
inter.cpp:21928
↓ 2 callers
Function
gen_dedup_idx_t
Overlaps.cpp:21361
↓ 2 callers
Function
gen_extend_err_0
Correct.cpp:13154
↓ 2 callers
Function
gen_extend_err_0_exz
Correct.cpp:13224
↓ 2 callers
Function
gen_extend_err_0_non_retrieve_exz
Correct.cpp:13293
↓ 2 callers
Function
gen_hc_fast_cigar
Correct.cpp:25137
↓ 2 callers
Function
gen_hc_r_alin_ea
ecovlp.cpp:2810
↓ 2 callers
Function
gen_max_gchain_adv
inter.cpp:15161
↓ 2 callers
Function
gen_mm_cns_arc
ecovlp.cpp:1220
↓ 2 callers
Function
gen_ori_seq0
ecovlp.cpp:5353
↓ 2 callers
Function
gen_polished_ug
Overlaps.cpp:10429
↓ 2 callers
Function
gen_scaf_path_lst
Overlaps.cpp:22578
↓ 2 callers
Function
gen_single_khit
Correct.cpp:16865
↓ 2 callers
Function
gen_src_shared_interval_adv
inter.cpp:11417
↓ 2 callers
Function
gen_sub_integer_path
gfa_ut.cpp:14043
↓ 2 callers
Function
gen_sub_integer_path_ff
gfa_ut.cpp:14173
↓ 2 callers
Function
gen_sub_ov_adv
Correct.cpp:22940
↓ 2 callers
Function
gen_sub_ov_adv_cigar
Correct.cpp:24695
↓ 2 callers
Function
gen_switch_phasing
Overlaps.cpp:24581
↓ 2 callers
Function
gen_trans_adaptive_aln
inter.cpp:10297
↓ 2 callers
Function
gen_usg_tig
gfa_ut.cpp:15515
↓ 2 callers
Function
gen_utg_telo
gfa_ut.cpp:16135
↓ 2 callers
Function
gen_win_chain
[qs, qe) && [ts, te)
Correct.cpp:17012
↓ 2 callers
Function
generate_seq_from_node
Correct.cpp:5226
↓ 2 callers
Function
generate_seq_from_path
Correct.cpp:5113
↓ 2 callers
Function
get_LCA
hic.cpp:3806
↓ 2 callers
Function
get_Ns
horder.cpp:2084
↓ 2 callers
Function
get_adjust_winid
void debug_window_cigar(overlap_region_alloc* overlap_list, UC_Read* g_read, Correct_dumy* dumy, All_reads* R_INF, int test_window, int test_boundary)
Correct.cpp:3079
↓ 2 callers
Function
get_alignment
hic.cpp:1257
↓ 2 callers
Function
get_arc
Overlaps.cpp:27692
↓ 2 callers
Function
get_arch_len
gfa_ut.cpp:3480
↓ 2 callers
Function
get_available_com
hic.cpp:10662
↓ 2 callers
Function
get_available_fully_covered_interval
Correct.cpp:6294
↓ 2 callers
Function
get_base_boundary
Purge_Dups.cpp:1462
↓ 2 callers
Function
get_base_boundary_chain
Purge_Dups.cpp:2135
↓ 2 callers
Function
get_best_cmk_read
find contained read with longest overlap
Overlaps.cpp:33979
↓ 2 callers
Function
get_best_contained_read
find contained read with longest overlap
Overlaps.cpp:33916
↓ 2 callers
Function
get_break_point_cov
Overlaps.cpp:11416
↓ 2 callers
Function
get_bub_graph
hic.cpp:7341
↓ 2 callers
Function
get_chain_ul_cov
gfa_ut.cpp:3962
↓ 2 callers
Function
get_chain_x
inter.cpp:2641
↓ 2 callers
Function
get_chimeric_reads_chain
Overlaps.cpp:34200
↓ 2 callers
Function
get_chimeric_reads_chain_by_broken_bub
Overlaps.cpp:34378
↓ 2 callers
Function
get_cluster_weight_debug
hic.cpp:14587
↓ 2 callers
Function
get_contained_reads_chain
Overlaps.cpp:34028
↓ 2 callers
Function
get_contained_reads_chain_by_broken_bub
Overlaps.cpp:34276
↓ 2 callers
Function
get_ecov_adv_back
inter.cpp:3332
↓ 2 callers
Function
get_ecov_el
inter.cpp:5341
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901–1,000 of 3,192, ranked by callers