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Functions3,192 in github.com/chhylp123/hifiasm

⨍ Functions 3,192◇ Types & classes 18
↓ 2 callersFunctionget_hc_weight
hic.cpp:6301
↓ 2 callersFunctionget_het_cnt
Assembly.cpp:584
↓ 2 callersFunctionget_idx_by_base
Purge_Dups.cpp:2114
↓ 2 callersFunctionget_init_paras
Correct.cpp:1052
↓ 2 callersFunctionget_insert_pos
tovlp.cpp:1717
↓ 2 callersFunctionget_interval_weight
hic.cpp:15538
↓ 2 callersFunctionget_junction_w
gfa_ut.cpp:11532
↓ 2 callersFunctionget_mb_edge
rcut.cpp:255
↓ 2 callersFunctionget_mc_edge
rcut.cpp:245
↓ 2 callersFunctionget_mz_occ
tovlp.cpp:1733
↓ 2 callersFunctionget_new_weight
hic.cpp:11610
↓ 2 callersFunctionget_no_coverage_reads_chain_simple
Overlaps.cpp:37620
↓ 2 callersFunctionget_nuid
horder.cpp:3606
↓ 2 callersFunctionget_num_edges2existing_nodes_advance_by_broken_bub
Overlaps.cpp:33258
↓ 2 callersFunctionget_oe_occ
hic.cpp:16763
↓ 2 callersFunctionget_path_phasing_weight
hic.cpp:12886
↓ 2 callersFunctionget_path_weight
hic.cpp:10288
↓ 2 callersFunctionget_read_breaks
horder.cpp:1084
↓ 2 callersFunctionget_real_sources_length
Overlaps.cpp:1670
↓ 2 callersFunctionget_ref_nid_flank
Overlaps.cpp:22019
↓ 2 callersFunctionget_s_bub_pop_max_dist_advance
Overlaps.cpp:26412
↓ 2 callersFunctionget_seq_from_Graph
Correct.cpp:5491
↓ 2 callersFunctionget_spec_ovlp_occ
inter.cpp:20255
↓ 2 callersFunctionget_specific_contig_length
Purge_Dups.cpp:4666
↓ 2 callersFunctionget_specific_hic_weight_by_chain
hic.cpp:14418
↓ 2 callersFunctionget_specific_weight_by_chain
hic.cpp:12581
↓ 2 callersFunctionget_sub_cov
horder.cpp:2133
↓ 2 callersFunctionget_sub_seq
ecovlp.cpp:823
↓ 2 callersFunctionget_switch_ovlp_hits
horder.cpp:1557
↓ 2 callersFunctionget_trans_interval_weight
hic.cpp:15762
↓ 2 callersFunctionget_trans_rate_function_advance
hic.cpp:9986
↓ 2 callersFunctionget_trio_labs
Overlaps.cpp:18176
↓ 2 callersFunctionget_u_trans_spec_idx
hic.cpp:15393
↓ 2 callersFunctionget_ug_edge_src
inter.cpp:3381
↓ 2 callersFunctionget_ug_integer_seq_occ
gfa_ut.cpp:10192
↓ 2 callersFunctionget_ul_spec_ovlp
gfa_ut.cpp:9191
↓ 2 callersFunctionget_unitig_s
Overlaps.cpp:26219
↓ 2 callersFunctionget_utg_chain_length
tovlp.cpp:111
↓ 2 callersFunctionget_utg_trans_hit
tovlp.cpp:273
↓ 2 callersFunctionget_win_info
inter.cpp:7303
↓ 2 callersFunctionget_win_off
Correct.cpp:22749
↓ 2 callersFunctionget_win_yoff
q[2], t[2]
Correct.cpp:22711
↓ 2 callersFunctionget_xy_pos_by_pos
Purge_Dups.cpp:1679
↓ 2 callersFunctiongfa_strndup
extract.cpp:25
↓ 2 callersFunctiongl_chain_linear
inter.cpp:5654
↓ 2 callersFunctionh_ec_lchain_re_chn
anchor.cpp:3491
↓ 2 callersFunctionh_ec_lchain_re_gen_qry
anchor.cpp:3474
↓ 2 callersFunctionh_ec_lchain_re_gen_srt
anchor.cpp:3424
↓ 2 callersFunctionha_Graph_mem
Assembly.cpp:513
↓ 2 callersFunctionha_analyze_count
hist.cpp:74
↓ 2 callersFunctionha_compress_qual_bit
Process_Read.cpp:864
↓ 2 callersFunctionha_ct_hist
YAK_N_COUNTS is also 4096 used for calculating k-mer histogram
htab.cpp:240
↓ 2 callersFunctionha_ec_dbg
Assembly.cpp:1053
↓ 2 callersFunctionha_extract_print_list
extract.cpp:165
↓ 2 callersFunctionha_opt_update_cov_min
CommandLines.cpp:420
↓ 2 callersFunctionha_overlap_cal
Assembly.cpp:1142
↓ 2 callersFunctionha_print_ovlp_stat
Assembly.cpp:1410
↓ 2 callersFunctionha_pt_cnt
htab.cpp:540
↓ 2 callersFunctionha_triobin_set_list
Trio.cpp:294
↓ 2 callersFunctionhap_ID
hic.cpp:18076
↓ 2 callersFunctionhap_chaining
Purge_Dups.cpp:2726
↓ 2 callersFunctionhap_recalculate_peaks
Assembly.cpp:1881
↓ 2 callersFunctionhc_chain_backtrack
p[]: id of last f[]: the score ending at i, not always the peak v[]: keeps the peak score up to i; t[]: used for buffer min_cnt = 2; min_sc = 30; extr
inter.cpp:14327
↓ 2 callersFunctionhc_gchain1_dp
inter.cpp:14371
↓ 2 callersFunctionhc_ovlp_base_direct
Correct.cpp:17425
↓ 2 callersFunctionhc_ovlp_base_non_retrieve_direct
Correct.cpp:17517
↓ 2 callersFunctionhc_pt_t_gen
hic.cpp:637
↓ 2 callersFunctionhc_simple_traversal
gfa_ut.cpp:3889
↓ 2 callersFunctionhpc_check
inter.cpp:11037
↓ 2 callersFunctionhpc_minimizer_test
anchor.cpp:2657
↓ 2 callersFunctionidentify_bubbles_recal_poy
hic.cpp:2913
↓ 2 callersFunctionidx_check_rate
gfa_ut.cpp:10214
↓ 2 callersFunctionif_direct_mask
Correct.cpp:21326
↓ 2 callersFunctionif_edge_exist
Overlaps.cpp:3997
↓ 2 callersFunctionif_empty_buffer
Output.cpp:53
↓ 2 callersFunctionif_long_tip_length
Overlaps.cpp:6321
↓ 2 callersFunctionincre_weight
rcut.cpp:1905
↓ 2 callersFunctioninit_Correct_dumy_buf
Correct.cpp:11220
↓ 2 callersFunctioninit_DP_matrix
Correct.h:913
↓ 2 callersFunctioninit_Debug_reads
Process_Read.cpp:1018
↓ 2 callersFunctioninit_Graph
POA.cpp:234
↓ 2 callersFunctioninit_all_ul_t
Process_Read.cpp:1080
↓ 2 callersFunctioninit_bub_label_t
Overlaps.cpp:354
↓ 2 callersFunctioninit_buffer_sub_block
Output.cpp:14
↓ 2 callersFunctioninit_hap_overlaps_list
Purge_Dups.cpp:549
↓ 2 callersFunctioninit_integer_ml_t
gfa_ut.cpp:405
↓ 2 callersFunctioninit_mc_gg_status
rcut.cpp:3806
↓ 2 callersFunctioninit_mc_poy_t
rcut.cpp:3911
↓ 2 callersFunctioninit_mul_block_phase_type
hic.cpp:11918
↓ 2 callersFunctioninit_scaf_res_t
Process_Read.cpp:2216
↓ 2 callersFunctioninit_trans_chain
Overlaps.cpp:14044
↓ 2 callersFunctioninit_ug_trans_t
inter.cpp:22022
↓ 2 callersFunctioninit_ul_str_idx_t
gfa_ut.cpp:4137
↓ 2 callersFunctioninit_window_list_alloc
Hash_Table.cpp:1347
↓ 2 callersFunctioninsert_snp_ee
Correct.cpp:10308
↓ 2 callersFunctioninteger_align_extention
gfa_ut.cpp:4977
↓ 2 callersFunctioninteger_node_del
gfa_ut.cpp:6896
↓ 2 callersFunctioninteger_normalize_ovlp
gfa_ut.cpp:6697
↓ 2 callersFunctionis_best_pair
gfa_ut.cpp:14192
↓ 2 callersFunctionis_best_path
gfa_ut.cpp:14066
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