Functions — github.com/ccsb-scripps/AutoDock-Vina

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Functions753 in github.com/ccsb-scripps/AutoDock-Vina

⨍ Functions 753◇ Types & classes 130

Methodoperator()

src/lib/parallel.h:78

Methodoperator()

src/lib/parallel.h:136

Methodoperator()

src/lib/parallel.h:171

Methodoperator()

src/lib/quasi_newton.cpp:35

Methodoperator()

src/lib/quasi_newton.cpp:43

Methodoperator()

src/lib/parallel_mc.cpp:46

Methodoperator()

src/lib/parallel_mc.cpp:63

Methodoperator()

src/lib/model.cpp:110

Methodoperator()

src/lib/model.cpp:287

Functionoperator*

src/lib/common.h:132

Methodoperator*

src/lib/common.h:77

Methodoperator*

src/lib/common.h:169

Methodoperator+

src/lib/common.h:104

Methodoperator++

src/lib/parallel_progress.h:46

Methodoperator-

src/lib/common.h:109

Functionoperator<

src/lib/conf.h:375

Functionoperator==

src/lib/atom.h:42

Functionoptimal

(oxygen, hydrogen)

example/autodock_scripts/mapwater.py:285

Functionoptimal_spherical

(oxygen, hydrogen)

example/autodock_scripts/mapwater.py:311

Methodoptions_occurrence

src/main/main.cpp:43

Methodoutput_type

src/lib/conf.h:369

FunctionpK_to_energy

src/lib/common.h:317

Methodparallel_for

src/lib/parallel.h:38

Methodparallel_for

src/lib/parallel.h:100

Methodparallel_iter

src/lib/parallel.h:161

Methodparallel_mc

src/lib/parallel_mc.h:33

Methodparallel_mc_aux

src/lib/parallel_mc.cpp:44

Methodparallel_mc_task

src/lib/parallel_mc.cpp:32

Methodparallel_progress

src/lib/parallel_progress.h:41

Functionparse_ligand_pdbqt_from_file

src/lib/parse_pdbqt.cpp:624

Methodparsed_atom

src/lib/parse_pdbqt.cpp:45

Methodpdbqt_initializer

pdbqt_initializer(): atom_typing_used(atom_type::XS), m(atom_type::XS) {}

src/lib/parse_pdbqt.cpp:573

Methodpdbqt_parse_error

src/lib/parse_error.h:31

Methodprecalculate

src/lib/precalculate.h:127

Methodprecalculate_byatom

src/lib/precalculate.h:196

Methodprecalculate_element

src/lib/precalculate.h:36

src/lib/quaternion.cpp:144

src/lib/grid_dim.h:57

src/lib/conf.h:84

src/lib/conf.h:135

src/lib/conf.h:151

src/lib/conf.h:172

src/lib/conf.h:187

src/lib/conf.h:203

src/lib/conf.h:267

Methodprint_stuff

src/lib/model.cpp:1075

(self, nearAtoms)

example/autodock_scripts/zinc_pseudo.py:261

Methodquasi_newton

src/lib/quasi_newton.h:31

Methodquasi_newton_aux

src/lib/quasi_newton.cpp:33

Functionquaternion_normalize

src/lib/quaternion.h:74

Functionrandom_sz

src/lib/random.cpp:54

Methodrandomize

src/lib/conf.h:103

Methodrandomize

src/lib/conf.h:168

Methodrandomize

src/lib/conf.h:200

src/lib/ad4cache.cpp:299

MethodrecTetraDev

Fast function - could be easily wrapped outside

example/autodock_scripts/zinc_pseudo.py:465

Methodremove_redundant

src/lib/vina.cpp:858

src/lib/model.h:56

src/lib/matrix.h:100

src/lib/array3d.h:67

Methodrigid_body

src/lib/tree.h:84

Methodrigid_change

src/lib/conf.h:83

Methodrigid_conf

src/lib/conf.h:93

Methodrmsd_ligands_upper_bound

src/lib/model.cpp:928

Methodrmsd_lower_bound_asymmetric

src/lib/model.cpp:881

src/lib/parallel.h:105

src/lib/parallel.h:162

src/lib/quaternion.h:38

src/lib/conf.h:35

src/lib/vina.h:115

src/lib/tree.h:112

Methodserialize

src/lib/conf.h:142

Methodserialize

src/lib/conf.h:179

Methodserialize

src/lib/conf.h:209

Methodserialize

src/lib/conf.h:352

Methodserialize

src/lib/grid.h:58

Methodserialize

src/lib/atom_type.h:70

Methodserialize

src/lib/atom_base.h:34

Methodserialize

src/lib/array3d.h:47

Methodserialize

src/lib/atom.h:36

Methodserialize

src/lib/atom.h:55

Methodserialize

src/lib/atom.h:69

Methodserialize

src/lib/common.h:127

Methodserialize

src/lib/grid_dim.h:40

Methodset_carboxyExp

example/autodock_scripts/zinc_pseudo.py:241

src/lib/tree.h:85

src/lib/tree.h:117

src/lib/tree.h:139

src/lib/tree.h:191

src/lib/tree.h:235

Methodset_coords

src/lib/tree.h:67

Methodset_derivative

src/lib/tree.h:104

Methodset_forcefield

src/lib/vina.cpp:282

Methodset_ligand_from_string

src/lib/vina.cpp:93

Methodset_orientation

src/lib/tree.h:45

Methodset_to_null

src/lib/conf.h:94

Methodset_to_null

src/lib/conf.h:160

Methodset_to_null

src/lib/conf.h:194

Methodsetcoords

example/autodock_scripts/zinc_pseudo.py:68

Methodshow_atoms

src/lib/model.cpp:1054

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