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github.com/ccsb-scripps/AutoDock-GPU
/ functions
Functions
633 in github.com/ccsb-scripps/AutoDock-GPU
⨍
Functions
633
◇
Types & classes
193
↓ 258 callers
Method
size
\brief Returns the size of the object in bytes based on the runtime number of dimensions
windows/include/CL/cl2.hpp:5542
↓ 231 callers
Function
setKernelArg
wrapcl/src/Kernels.cpp:308
↓ 197 callers
Function
errHandler
windows/include/CL/cl2.hpp:707
↓ 152 callers
Function
errHandler
windows/include/CL/cl.hpp:325
↓ 102 callers
Method
size
windows/include/CL/cl.hpp:4797
↓ 80 callers
Function
argcmp
host/src/getparameters.cpp:1357
↓ 29 callers
Function
getInfo
windows/include/CL/cl2.hpp:1367
↓ 24 callers
Function
getInfo
windows/include/CL/cl.hpp:1565
↓ 21 callers
Function
mallocBufferObject
wrapcl/src/BufferObjects.cpp:28
↓ 15 callers
Function
memcopyBufferObjectToDevice
wrapcl/src/BufferObjects.cpp:213
↓ 10 callers
Method
end
windows/include/CL/cl.hpp:949
↓ 10 callers
Function
stricmp
This was disabled for Windows
host/src/miscellaneous.cpp:510
↓ 9 callers
Method
begin
windows/include/CL/cl.hpp:942
↓ 8 callers
Function
has_absolute_path
host/src/miscellaneous.cpp:272
↓ 8 callers
Function
memcopyBufferObjectFromDevice
wrapcl/src/BufferObjects.cpp:234
↓ 8 callers
Function
runKernel1D
wrapcl/src/Kernels.cpp:325
↓ 8 callers
Function
seconds_since
host/src/main.cpp:60
↓ 7 callers
Function
createKernel
wrapcl/src/Kernels.cpp:29
↓ 7 callers
Function
move_ligand
host/src/processligand.cpp:1389
↓ 7 callers
Function
range_trim_to_char
trim input string range -- careful: no range checking
host/inc/miscellaneous.h:110
↓ 7 callers
Function
start_timer
host/src/main.cpp:77
↓ 6 callers
Function
fence
windows/include/CL/cl.hpp:1076
↓ 6 callers
Method
get
windows/include/CL/cl2.hpp:1652
↓ 6 callers
Function
get_gridinfo
host/src/processgrid.cpp:28
↓ 6 callers
Function
print_options
host/src/getparameters.cpp:1254
↓ 6 callers
Function
size
\brief Queries the length of the string, excluding any added '\0's.
windows/include/CL/cl.hpp:641
↓ 5 callers
Function
buildErrHandler
windows/include/CL/cl2.hpp:1849
↓ 5 callers
Function
is_H_acceptor
host/src/processligand.cpp:1512
↓ 5 callers
Method
random_float
host/inc/miscellaneous.h:222
↓ 5 callers
Function
scale_ligand
host/src/processligand.cpp:1423
↓ 5 callers
Function
strincmp
host/src/miscellaneous.cpp:549
↓ 4 callers
Function
calc_intraE_f
Corrected host "calc_intraE_f" function after smoothing was added
host/src/processligand.cpp:2058
↓ 4 callers
Function
distance2
host/src/miscellaneous.cpp:107
↓ 4 callers
Method
err
! \brief Get error code associated with exception * * \return The error code. */
windows/include/CL/cl2.hpp:696
↓ 4 callers
Function
get_filepath
host/src/miscellaneous.cpp:293
↓ 4 callers
Function
is_dirname
host/src/miscellaneous.cpp:262
↓ 4 callers
Function
ligand_calc_output
host/src/processresult.cpp:538
↓ 4 callers
Function
read_receptor
host/src/getparameters.cpp:2243
↓ 4 callers
Function
trim
trim from both ends (in place)
host/src/getparameters.cpp:51
↓ 3 callers
Function
add_deriv_atype
host/inc/getparameters.h:147
↓ 3 callers
Function
calc_interE_f
host/src/processligand.cpp:1796
↓ 3 callers
Function
calc_rmsd
host/src/processligand.cpp:1441
↓ 3 callers
Function
clear
! \brief Empties the vector of all elements. * \note * This does not deallocate memory but will invoke destructors * on contained el
windows/include/CL/cl.hpp:715
↓ 3 callers
Function
copy
windows/include/CL/cl2.hpp:8706
↓ 3 callers
Function
copy
windows/include/CL/cl.hpp:6822
↓ 3 callers
Method
dimensions
\brief Queries the number of dimensions in the range.
windows/include/CL/cl2.hpp:5535
↓ 3 callers
Method
dimensions
\brief Queries the number of dimensions in the range.
windows/include/CL/cl.hpp:4780
↓ 3 callers
Function
distance
host/src/miscellaneous.cpp:95
↓ 3 callers
Function
elapsed_seconds
host/src/performdocking.cpp:392
↓ 3 callers
Method
enqueueMapSVM
windows/include/CL/cl2.hpp:7538
↓ 3 callers
Method
enqueueUnmapSVM
windows/include/CL/cl2.hpp:7643
↓ 3 callers
Function
filelist_add
host/src/getparameters.cpp:852
↓ 3 callers
Function
getInfoHelper
windows/include/CL/cl2.hpp:875
↓ 3 callers
Function
getInfoHelper
windows/include/CL/cl.hpp:1131
↓ 3 callers
Function
get_filenames_and_ADcoeffs
host/src/getparameters.cpp:1162
↓ 3 callers
Function
get_moving_and_unit_vectors
host/src/processligand.cpp:1068
↓ 3 callers
Function
get_movvec_to_origo
host/src/processligand.cpp:1363
↓ 3 callers
Function
is_H_bond
host/src/processligand.cpp:1521
↓ 3 callers
Function
is_mod_pair
host/src/processligand.cpp:735
↓ 2 callers
Function
analyze_ligand_receptor
host/src/processligand.cpp:1677
↓ 2 callers
Function
assign
windows/include/CL/cl.hpp:894
↓ 2 callers
Function
begin
windows/include/CL/cl.hpp:999
↓ 2 callers
Function
change_conform
host/src/processligand.cpp:1607
↓ 2 callers
Function
check_progress
host/src/performdocking.cpp:1686
↓ 2 callers
Function
end
windows/include/CL/cl.hpp:1009
↓ 2 callers
Method
enqueueMapBuffer
windows/include/CL/cl2.hpp:7470
↓ 2 callers
Method
enqueueMapBuffer
windows/include/CL/cl.hpp:6144
↓ 2 callers
Function
enqueueMapSVM
windows/include/CL/cl2.hpp:8519
↓ 2 callers
Method
enqueueNDRangeKernel
windows/include/CL/cl2.hpp:7813
↓ 2 callers
Method
enqueueUnmapMemObject
windows/include/CL/cl2.hpp:7615
↓ 2 callers
Method
enqueueUnmapMemObject
windows/include/CL/cl.hpp:6205
↓ 2 callers
Method
eval
Input: genes Output: score
input/1ac8/derived/eval.py:49
↓ 2 callers
Function
gen_new_pdbfile
host/src/processligand.cpp:1323
↓ 2 callers
Function
getContextPlatformVersion
windows/include/CL/cl2.hpp:1571
↓ 2 callers
Function
getContextPlatformVersion
windows/include/CL/cl.hpp:1767
↓ 2 callers
Function
getDevicePlatformVersion
windows/include/CL/cl2.hpp:1564
↓ 2 callers
Function
getDevicePlatformVersion
windows/include/CL/cl.hpp:1759
↓ 2 callers
Function
getDevices
wrapcl/src/Devices.cpp:28
↓ 2 callers
Method
getInfo
windows/include/CL/cl2.hpp:6504
↓ 2 callers
Function
getKernelInfo
wrapcl/src/Kernels.cpp:69
↓ 2 callers
Function
getKernelWorkGroupInfo
wrapcl/src/Kernels.cpp:194
↓ 2 callers
Function
getPlatforms
wrapcl/src/Platforms.cpp:28
↓ 2 callers
Function
getProgramInfo
wrapcl/src/Programs.cpp:29
↓ 2 callers
Function
getprogramBuildInfo
wrapcl/src/Programs.cpp:237
↓ 2 callers
Function
init_liganddata
host/src/processligand.cpp:40
↓ 2 callers
Function
make_reqrot_ordering
host/src/calcenergy.cpp:349
↓ 2 callers
Function
memMap
wrapcl/src/BufferObjects.cpp:287
↓ 2 callers
Function
parse_dpf
host/src/getparameters.cpp:135
↓ 2 callers
Function
parse_liganddata
host/src/processligand.cpp:1124
↓ 2 callers
Function
processid
host/inc/miscellaneous.h:41
↓ 2 callers
Function
push_back
! \brief Appends an element after the last valid element. * Calling this on a vector that has reached capacity will throw an * exception if
windows/include/CL/cl.hpp:726
↓ 2 callers
Function
read_receptor_atoms
host/src/getparameters.cpp:2175
↓ 2 callers
Function
read_xml_genomes
host/src/getparameters.cpp:2406
↓ 2 callers
Method
retain
windows/include/CL/cl.hpp:1851
↓ 2 callers
Function
rotate
host/src/miscellaneous.cpp:150
↓ 2 callers
Method
setArg
windows/include/CL/cl2.hpp:5775
↓ 2 callers
Method
setSVMPointers
! * Specify a vector of SVM pointers that the kernel may access in * addition to its arguments. */
windows/include/CL/cl2.hpp:5831
↓ 2 callers
Function
setup_gpu_for_docking
host/src/performdocking.cpp:135
↓ 2 callers
Function
strndup
host/inc/miscellaneous.h:143
↓ 2 callers
Function
unmemMap
wrapcl/src/BufferObjects.cpp:323
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