(self, x)

(path, ID)

(data_path, ID)

(seed=2021)

(self, protein_in_dim, protein_out_dim=64, target_dim=1, fc_layer_num=2, atten_layer_num=2, atten_head=4, num_

(path, ID, msa)

(data_path, ID, PDB_seq)

(data_path, ID, ref_seq)

(path, ID, msa)

(seq, dssp, ref_seq)

(data_path, model_path, ID, msa)

(data_path, ID, msa)

(distance_map_file)

(dssp_file)

(hhm_file)

(pssm_file)

(dssp_feature)

(self, hidden_size, num_attention_heads=4, num_neighbor=30, drop_rate=0)

(self,q,k,v,attention_mask=None,attention_weight=None,use_top=True)

(self, protein_node_features, protein_edge_features, protein_dist_matrix, protein_masks)