(t *testing.T)
| 68 | } |
| 69 | |
| 70 | func TestOptimize(t *testing.T) { |
| 71 | gfpTranslation := "MASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK*" |
| 72 | |
| 73 | sequence, _ := genbank.Read("../../data/puc19.gbk") |
| 74 | |
| 75 | table, err := NewTranslationTable(11) |
| 76 | if err != nil { |
| 77 | t.Fatalf("failed to initialise codon table: %s", err) |
| 78 | } |
| 79 | |
| 80 | err = table.UpdateWeightsWithSequence(sequence) |
| 81 | if err != nil { |
| 82 | t.Error(err) |
| 83 | } |
| 84 | |
| 85 | codonTable, err := NewTranslationTable(11) |
| 86 | if err != nil { |
| 87 | t.Fatalf("failed to initialise codon table: %s", err) |
| 88 | } |
| 89 | |
| 90 | optimizedSequence, _ := table.Optimize(gfpTranslation) |
| 91 | optimizedSequenceTranslation, _ := codonTable.Translate(optimizedSequence) |
| 92 | |
| 93 | if optimizedSequenceTranslation != gfpTranslation { |
| 94 | t.Errorf("TestOptimize has failed. Translate has returned %q, want %q", optimizedSequenceTranslation, gfpTranslation) |
| 95 | } |
| 96 | } |
| 97 | |
| 98 | func TestOptimizeSameSeed(t *testing.T) { |
| 99 | var gfpTranslation = "MASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK*" |
nothing calls this directly
no test coverage detected