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Functions1,743 in github.com/bab2min/tomotopy

⨍ Functions 1,743◇ Types & classes 460

↓ 1 callersFunctioncolorize

tomotopy/viewer/viewer_server.py:67

↓ 1 callersMethodcomputeHash

src/Utils/Dictionary.cpp:53

↓ 1 callersMethodcompute_data_density

(self, x_values, axis, categorical_metadata)

tomotopy/viewer/viewer_server.py:567

↓ 1 callersMethodconvert_to_lda

.. versionadded:: 0.8.0 Convert the current HDP model to equivalent LDA model and return `(new_lda_model, new_topic_id)`. Topics with proportion less

tomotopy/models.py:1195

↓ 1 callersMethodcopy

src/TopicModel/SLDAModel.hpp:74

↓ 1 callersMethodcopy

.. versionadded:: 0.12.0 Return a new deep-copied instance of the current instance

tomotopy/models.py:295

↓ 1 callersFunctioncorpus_and_labeling_example

examples/corpus_and_labeling.py:4

↓ 1 callersFunctioncos_ps

almost the same as sin_ps */

src/Utils/avx_mathfun.h:473

↓ 1 callersMethodcurptr

src/Utils/serializer.hpp:46

↓ 1 callersFunctiondata_feeder

examples/dtm.py:6

↓ 1 callersFunctiondigamma

src/Utils/math.h:114

↓ 1 callersFunctiondigammaf

src/Utils/math.h:71

↓ 1 callersFunctiondigammal

This digamma implmentation is from http://www2.mpia-hd.mpg.de/~mathar/progs/digamma.c, and modified by bab2min. */

src/Utils/math.h:22

↓ 1 callersMethoddistributePartition

src/TopicModel/LDAModel.hpp:475

↓ 1 callersFunctiondrawPolyaGamma

src/Utils/PolyaGamma.hpp:195

↓ 1 callersFunctiondraw_contour_map

(arr, interval, smooth=True)

tomotopy/viewer/viewer_server.py:75

↓ 1 callersMethoddropPathOne

src/TopicModel/HLDAModel.hpp:87

↓ 1 callersMethodend

src/Utils/tvector.hpp:165

↓ 1 callersMethodestimate

src/TopicModel/SLDAModel.hpp:109

↓ 1 callersMethodestimate

Return the estimated response variable for `doc`. If `doc` is an unseen document instance which is generated by `tomotopy.models.SLDAModel.make_doc` m

tomotopy/models.py:2062

↓ 1 callersFunctionestimate_confidence_interval_of_dd

(alpha, p=0.95, samples=16384)

tomotopy/viewer/viewer_server.py:164

↓ 1 callersMethodevaluateLambdaObj

src/TopicModel/DMRModel.hpp:75

↓ 1 callersFunctionexp_ps

src/Utils/avx_mathfun.h:266

↓ 1 callersMethodextract

Return the list of `tomotopy.label.Candidate`s extracted from `topic_model` Parameters ---------- topic_model an instance of topic model with doc

tomotopy/label.py:41

↓ 1 callersFunctionextractPMIBENgrams

src/Labeling/Phraser.hpp:371

↓ 1 callersFunctionextract_ngrams_example

examples/extract_ngram.py:4

↓ 1 callersMethodfeedNext

src/python/handler/PyUtils.h:2038

↓ 1 callersFunctionfeeder

test/unit_test.py:348

↓ 1 callersMethodfindFail

src/Utils/Trie.hpp:167

↓ 1 callersMethodfindNode

src/Utils/Trie.hpp:115

↓ 1 callersFunctionfind_best_labels_for_range

(start, end, max_labels)

tomotopy/viewer/viewer_server.py:137

↓ 1 callersMethodfindall

src/python/handler/py_utils.cpp:1175

↓ 1 callersMethodforLarge

src/Utils/math.h:128

↓ 1 callersMethodforNonFinite

src/Utils/math.h:129

↓ 1 callersMethodforSmall

src/Utils/math.h:123

↓ 1 callersMethodgenerateLeafNode

src/TopicModel/HLDAModel.hpp:281

↓ 1 callersMethodgetAlpha

src/python/handler/py_DT.cpp:141

↓ 1 callersFunctiongetArrayDtype

src/python/handler/PyUtils.h:1323

↓ 1 callersFunctiongetArraySize

src/python/handler/PyUtils.h:1337

↓ 1 callersMethodgetCountByTopic

src/python/handler/py_DT.cpp:127

↓ 1 callersMethodgetDocIdByUid

src/TopicModel/TopicModel.hpp:892

↓ 1 callersMethodgetDocLL

src/TopicModel/TopicModel.hpp:830

↓ 1 callersMethodgetEta

src/python/handler/py_DT.cpp:156

↓ 1 callersMethodgetK

src/TopicModel/TopicModel.hpp:767

↓ 1 callersMethodgetLL

src/TopicModel/SLDAModel.hpp:102

↓ 1 callersMethodgetLLDocs

src/TopicModel/DTModel.hpp:345

↓ 1 callersMethodgetLLDocs

src/TopicModel/LDAModel.hpp:617

↓ 1 callersMethodgetLLRest

src/TopicModel/DTModel.hpp:365

↓ 1 callersMethodgetLLRest

src/TopicModel/LDACVB0Model.hpp:231

↓ 1 callersMethodgetLabels

src/python/handler/py_LLDA.cpp:129

↓ 1 callersMethodgetLiveK

src/TopicModel/HDPModel.hpp:478

↓ 1 callersMethodgetMdRange

src/TopicModel/GDMRModel.hpp:563

↓ 1 callersMethodgetMultiMetadataDict

src/python/handler/py_DMR.cpp:153

↓ 1 callersMethodgetNegativeLambdaLL

src/TopicModel/DMRModel.hpp:69

↓ 1 callersMethodgetNumTopicsForPrior

src/TopicModel/PAModel.hpp:465

↓ 1 callersMethodgetSubTopicBySuperTopic

src/TopicModel/PAModel.hpp:409

↓ 1 callersMethodgetSubTopicBySuperTopicSorted

src/TopicModel/PAModel.hpp:420

↓ 1 callersMethodgetSubTopicsByDocSorted

src/TopicModel/PAModel.hpp:445

↓ 1 callersMethodgetTDF

src/TopicModel/GDMRModel.hpp:505

↓ 1 callersMethodgetTDFBatch

src/TopicModel/GDMRModel.hpp:529

↓ 1 callersMethodgetVocabWeightedCf

src/TopicModel/TopicModel.hpp:914

↓ 1 callersMethodgetWordIdsByTopicSorted

src/TopicModel/TopicModel.hpp:812

↓ 1 callersMethodgetWordsByDocSorted

src/TopicModel/TopicModel.hpp:825

↓ 1 callersMethodgetZLikelihoods

src/TopicModel/PAModel.hpp:72

↓ 1 callersMethodget_count_by_super_topic

Return the number of words allocated to each super-topic. .. versionadded:: 0.9.0

tomotopy/models.py:1622

↓ 1 callersMethodget_count_by_topics

Return the number of words allocated to each topic.

tomotopy/models.py:301

↓ 1 callersMethodget_regression_coef

Return the regression coefficient of the response variable `var_id`. Parameters ---------- var_id : int indicating the response variable, in rang

tomotopy/models.py:2046

↓ 1 callersMethodget_topic_words

Return the `top_n` words and their probabilities in the topic `topic_id`. The return type is a `list` of (word:`str`, probability:`float`) if `return

tomotopy/models.py:2182

↓ 1 callersMethodget_topic_words

Return the `top_n` words and their probabilities in the topic `topic_id`. The return type is a `list` of (word:`str`, probability:`float`). Paramete

tomotopy/models.py:2308

↓ 1 callersMethodget_topic_words

Return the `top_n` words and their probabilities in the topic `topic_id` with `timepoint`. The return type is a `list` of (word:`str`, probability:`f

tomotopy/models.py:2628

↓ 1 callersMethodget_var_type

Return the type of the response variable `var_id`. 'l' means linear variable, 'b' means binary variable.

tomotopy/models.py:2058

↓ 1 callersMethodget_words

.. versionadded:: 0.4.2 Return the `top_n` words with their probabilities for the document.

tomotopy/utils.py:65

↓ 1 callersMethodhash

src/Utils/serializer.hpp:737

↓ 1 callersFunctionhdp_example

(input_file, save_path)

examples/hdp_basic.py:4

↓ 1 callersFunctionhlda_example

(input_file, save_path)

examples/hlda_basic.py:5

↓ 1 callersFunctioninfer

(cls, inputFile, mdFields, f, kargs, ps)

test/unit_test.py:246

↓ 1 callersFunctioninfer_new_corpus

Since 0.10.0 version, inference using an instance of `Corpus` was supported.

examples/corpus_and_inference.py:7

↓ 1 callersFunctioninfer_new_doc

Prior to version 0.10.0, we had to make instances of `Document` using `make_doc` first and call `infer`.

examples/corpus_and_inference.py:35

↓ 1 callersMethodinit

src/python/handler/PyUtils.h:2072

↓ 1 callersMethodinitGlobalState

src/TopicModel/LDACVB0Model.hpp:265

↓ 1 callersMethodinitGlobalState

src/TopicModel/LDAModel.hpp:739

↓ 1 callersMethodinitParameters

src/TopicModel/DMRModel.hpp:131

↓ 1 callersFunctioninsertIntoEmpty

src/Utils/Utils.hpp:206

↓ 1 callersMethoditerateBuffers

src/Utils/serializer.hpp:783

↓ 1 callersFunctionjoin

src/Utils/text.hpp:25

↓ 1 callersFunctionlda_example

(input_file, save_path)

examples/lda_basic.py:4

↓ 1 callersMethodlevel

Return the level of a topic `topic_id`. Parameters ---------- topic_id : int an integer in range [0, `k`) indicating the topic

tomotopy/models.py:2440

↓ 1 callersFunctionlgamma512_subt

approximation : lgamma(z + a) - lgamma(z) = (z + a + 1.5) * log(z + a + 2) - (z + 1.5) * log(z + 2) - a + (1. / (z + a + 2) - 1. / (z + 2)) / 12. - lo

src/Utils/avx512_gamma.h:18

↓ 1 callersFunctionlgammaApprox

src/Utils/math.h:158

↓ 1 callersFunctionlgamma_subt

src/Utils/EigenAddonOps.hpp:95

↓ 1 callersFunctionlog2_ceil

src/Utils/sample.hpp:25

↓ 1 callersFunctionmain

tomotopy/viewer/__main__.py:4

↓ 1 callersMethodmakeDoc

src/python/handler/py_LDA.cpp:223

↓ 1 callersMethodmakeGeneratorForInit

src/TopicModel/LDACVB0Model.hpp:281

↓ 1 callersMethodmakeMisc

src/TopicModel/DMR.h:58

↓ 1 callersMethodmake_doc

Return a new `tomotopy.utils.Document` instance for an unseen document with `words` and `labels` that can be used for `tomotopy.models.LDAModel.infer`

tomotopy/models.py:2296

↓ 1 callersMethodmapToNewDictAdd

src/Utils/Dictionary.cpp:93

↓ 1 callersMethodmarkEmptyBlocks

src/TopicModel/HLDAModel.hpp:151

↓ 1 callersMethodmergeState

src/TopicModel/LDACVB0Model.hpp:209

↓ 1 callersMethodminimize

src/Utils/LBFGS.h:85

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