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Functions1,743 in github.com/bab2min/tomotopy

Methodget_metadata
(self)
tomotopy/viewer/viewer_server.py:583
Methodget_overview
(self)
tomotopy/viewer/viewer_server.py:397
Methodget_phi
Return a `list` of phi parameters for `timepoint` and `topic_id`. Parameters ---------- timepoint : int an integer with range [0, `t`) topic_id :
tomotopy/models.py:2616
Methodget_sub_topic_dist
.. versionadded:: 0.5.0 Return a distribution of the sub topics in the document. (for only `tomotopy.models.PAModel`) Parameters ---------- normaliz
tomotopy/utils.py:52
Methodget_sub_topic_dist
Return a distribution of the sub topics in a super topic `super_topic_id`. The returned value is a `list` that has `k2` fraction numbers indicating pr
tomotopy/models.py:1561
Methodget_sub_topics
.. versionadded:: 0.5.0 Return the `top_n` sub topics with their probabilities for the document. (for only `tomotopy.models.PAModel`)
tomotopy/utils.py:46
Methodget_tdf_map
(self)
tomotopy/viewer/viewer_server.py:612
Methodget_topic
(self)
tomotopy/viewer/viewer_server.py:499
Methodget_topic_rel
(self)
tomotopy/viewer/viewer_server.py:532
Methodget_topic_word_dist
Return the word distribution of the topic `topic_id`. The returned value is a `list` that has `len(vocabs)` fraction numbers indicating probabilities
tomotopy/models.py:308
Methodget_topic_word_dist
Return the word distribution of the topic `topic_id`. The returned value is a `list` that has `len(vocabs)` fraction numbers indicating probabilities
tomotopy/models.py:1377
Methodget_topic_word_dist
Return the word distribution of the topic `topic_id`. The returned value is a `list` that has `len(vocabs)` fraction numbers indicating probabilities
tomotopy/models.py:1754
Methodget_topic_word_dist
Return the word distribution of the topic `topic_id` with `timepoint`. The returned value is a `list` that has `len(vocabs)` fraction numbers indicati
tomotopy/models.py:2641
Methodget_word_forms
(self, idx = -1)
tomotopy/models.py:339
Methodget_word_prior
.. versionadded:: 0.6.0 Return word-topic prior for `word`. If there is no set prior for `word`, an empty list is returned. Parameters ---------- wo
tomotopy/models.py:342
Methodgetattro
src/python/handler/py_utils.cpp:915
Methodgetitem
src/python/handler/py_utils.cpp:85
Methodgetstate
src/python/handler/py_utils.cpp:59
Methodglobal_step
the total number of iterations of training (read-only) .. versionadded:: 0.9.0
tomotopy/models.py:159
Methodhash
src/Utils/serializer.hpp:389
Methodhash
src/Utils/serializer.hpp:408
Methodhash
src/Utils/serializer.hpp:491
Methodhash
src/Utils/serializer.hpp:520
Methodhash
src/Utils/serializer.hpp:557
Methodhash
src/Utils/serializer.hpp:581
Methodhash
src/Utils/serializer.hpp:611
Methodhash
src/Utils/serializer.hpp:635
Methodhash
src/Utils/serializer.hpp:665
Methodhash
src/Utils/serializer.hpp:686
Methodhash
src/Utils/serializer.hpp:762
Methodimstream
src/Utils/serializer.hpp:60
Methodimstream
src/Utils/serializer.cpp:58
Methodincref
src/python/handler/PyUtils.h:168
Methodincref
src/python/handler/PyUtils.h:256
Methodincref
src/Utils/SharedString.cpp:5
Methodinfer
src/python/handler/py_PA.cpp:94
Methodinfer
src/python/handler/py_LDA.cpp:345
Methodinfer
src/python/handler/py_HPA.cpp:61
Methodinfer
src/TopicModel/TopicModel.hpp:842
Functioninfer_together
(cls, inputFile, mdFields, f, kargs, ps)
test/unit_test.py:272
Methodinit
src/python/handler/PyUtils.h:1842
Methodinit
src/python/handler/PyUtils.h:1928
Methodinit
src/Utils/SharedString.cpp:25
Methodinit
src/Coherence/CoherenceModel.hpp:25
MethodinitFromPython
src/python/handler/PyUtils.h:1830
MethodinitFromPython
src/python/handler/PyUtils.h:1922
MethodinitGlobalState
src/TopicModel/LLDAModel.hpp:67
MethodinitGlobalState
src/TopicModel/DMRModel.hpp:301
MethodinitGlobalState
src/TopicModel/DTModel.hpp:399
MethodinitGlobalState
src/TopicModel/HDPModel.hpp:386
MethodinitGlobalState
src/TopicModel/PAModel.hpp:308
MethodinitGlobalState
src/TopicModel/HLDAModel.hpp:516
MethodinitGlobalState
src/TopicModel/CTModel.hpp:234
MethodinitGlobalState
src/TopicModel/SLDAModel.hpp:318
MethodinitGlobalState
src/TopicModel/PTModel.hpp:168
MethodinitGlobalState
src/TopicModel/GDMRModel.hpp:351
MethodinitGlobalState
src/TopicModel/MGLDAModel.hpp:302
MethodinitGlobalState
src/TopicModel/HPAModel.hpp:380
MethodinitGlobalState
src/TopicModel/PLDAModel.hpp:71
MethodinitParameters
src/TopicModel/GDMRModel.hpp:65
MethodinitializeDocState
src/TopicModel/LDACVB0Model.hpp:295
MethodinitializeDocState
src/TopicModel/LDAModel.hpp:782
MethodinsertCorpus
src/python/handler/py_LDA.cpp:31
MethodinsertDoc
src/Coherence/ProbEstimator.hpp:102
MethodinsertDoc
src/Coherence/ProbEstimator.hpp:271
MethodinsertTargets
src/Coherence/ProbEstimator.hpp:93
MethodisLeaf
src/TopicModel/HLDAModel.hpp:82
MethodisLiveTopic
src/python/handler/py_HDP.cpp:32
MethodisLiveTopic
src/TopicModel/HDPModel.hpp:485
MethodisLiveTopic
src/TopicModel/HLDAModel.hpp:637
MethodisOwner
src/Utils/tvector.hpp:291
MethodisSubDocs
src/python/handler/utils.h:62
Methodis_live_topic
Return `True` if the topic `topic_id` is alive, otherwise return `False`. Parameters ---------- topic_id : int an integer in range [0, `k`) indic
tomotopy/models.py:2420
Methoditer
src/python/handler/PyUtils.h:2002
Methoditer
src/python/handler/PyUtils.h:3162
Methoditer
src/python/handler/py_utils.cpp:782
Methoditernext
src/python/handler/PyUtils.h:2008
Methoditernext
src/python/handler/PyUtils.h:3178
Methoditernext
src/python/handler/py_utils.cpp:803
Methodjj_m1
src/Utils/PolyaGamma.hpp:151
Methodjj_m2
src/Utils/PolyaGamma.hpp:162
Methodk
K, the number of topics (read-only)
tomotopy/models.py:166
Methodk1
k1, the number of super topics (read-only)
tomotopy/models.py:1629
Methodk2
k2, the number of sub topics (read-only)
tomotopy/models.py:1634
Methodk_g
the hyperparameter k_g (read-only)
tomotopy/models.py:1394
Methodk_l
the hyperparameter k_l (read-only)
tomotopy/models.py:1399
Methodlabels
a `list` of (label, list of probabilities of each topic belonging to the label) of the document (for only `tomotopy.models.LLDAModel` and `tomotopy.mo
tomotopy/utils.py:156
Methodlambda_
parameter lambdas in the shape `[k, len(metadata_dict), l]` where `k` is the number of topics and `l` is the size of vector for multi_metadata (read-o
tomotopy/models.py:828
Methodlambdas
parameter lambdas in the shape `[k, f]` (read-only) .. warning:: Prior to version 0.11.0, there was a bug in the lambda getter, so it yielded th
tomotopy/models.py:819
Methodlatent_topics
the number of latent topics (read-only)
tomotopy/models.py:2332
Methodlen
src/python/handler/PyUtils.h:2462
Methodlen
src/python/handler/PyUtils.h:2534
Methodlen
src/python/handler/PyUtils.h:2617
Functionlgamma512_ps
approximation : lgamma(z) ~= (z+2.5)ln(z+3) - z - 3 + 0.5 ln (2pi) + 1/12/(z + 3) - ln (z(z+1)(z+2))
src/Utils/avx512_gamma.h:5
Functionlgamma_ps
approximation : lgamma(z) ~= (z+2.5)ln(z+3) - z - 3 + 0.5 ln (2pi) + 1/12/(z + 3) - ln (z(z+1)(z+2))
src/Utils/neon_gamma.h:10
Functionlgamma_ps
approximation : lgamma(z) ~= (z+2.5)ln(z+3) - z - 3 + 0.5 ln (2pi) + 1/12/(z + 3) - ln (z(z+1)(z+2))
src/Utils/sse_gamma.h:5
Functionlgamma_ps
approximation : lgamma(z) ~= (z+2.5)ln(z+3) - z - 3 + 0.5 ln (2pi) + 1/12/(z + 3) - ln (z(z+1)(z+2))
src/Utils/avx_gamma.h:5
Functionlgamma_subt
approximation : lgamma(z + a) - lgamma(z) = (z + a + 1.5) * log(z + a + 2) - (z + 1.5) * log(z + 2) - a + (1. / (z + a + 2) - 1. / (z + 2)) / 12. - lo
src/Utils/neon_gamma.h:23
Functionlgamma_subt
approximation : lgamma(z + a) - lgamma(z) = (z + a + 1.5) * log(z + a + 2) - (z + 1.5) * log(z + 2) - a + (1. / (z + a + 2) - 1. / (z + 2)) / 12. - lo
src/Utils/avx_gamma.h:18
Methodlive_k
the number of alive topics (read-only)
tomotopy/models.py:1228
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