Get paths of all collected files.

Recursively apply patience diff to a region. # Arguments `old` - Slice of the old sequence for this region `new` - Slice of the new sequence for thi

Read an entry without updating its access time. This is safe to call with only a shared reference (`&self`), making it suitable for use behind a `RwL

Populate the file index for all tracked files after a materialize. Stats each tracked file from disk and stores its mtime + size + content hash in th

POST with no request body, unwrap `ApiResponse` envelope.

Set whether to preserve unchanged tokens.

Generate a short preview for [`ToolTraceEntry`].

Print changes covered.

Print a line with highlighted hunks

Print model breakdown.

Print a one-line summary of an attestation.

Get a reference to the provenance information.

Clone a working tree from `src` to `dest`, one file at a time, reflinking where possible. Skips the `.atomic/` graph directory.

Push a child entry to the children array. This should be called while building a span's child list. Don't forget to push the sentinel `(None, VertexI

Read all entries (path, bytes) from a gzipped tar layer.

Reassemble a token sequence into raw bytes.

Record all changes with a message. This is a convenience method that records all modified files. # Arguments `message` - The change message # Exam

Record a successfully applied change. # Example ```rust use atomic::commands::pull::types::PullStats; let mut stats = PullStats::new(); stats.recor

Record a successfully downloaded change. Increments the download counter and adds the bytes to the transfer total. # Arguments `bytes` - The size o

Record an error.

Record a failed download. # Example ```rust use atomic::commands::clone::types::CloneStats; let mut stats = CloneStats::new(); stats.record_failed(

Record a failed download. # Example ```rust use atomic::commands::pull::types::PullStats; let mut stats = PullStats::new(); stats.record_failed();

Record redundant edges found during output. # Arguments `count` - Number of redundant edges to add

Record that a file was skipped.

Record a skipped item.

Record that a file was skipped.

Record a successfully downloaded tag.

Record a successfully downloaded tag.

Remove the atomic:git:begin..end section from a hook file. Returns Ok(true) if something was removed.

Remove hook entries whose command contains `prefix`. Handles both nested (`{matcher?, hooks: [{command}]}`) and flat (`{command}`/`{bash}`) shapes. Em

Format renamed content in cyan. Use this for renamed files or moved content.

Render an `ATOMIC_INSTALL=...` value suitable for embedding in a shell snippet. When the directory equals `$HOME/.local/bin` literally we keep the pre

Render a vault entry to a markdown string with YAML frontmatter. The frontmatter is constructed from: 1. The entry's `frontmatter_json` fields (user-

Internal helper to render content with ANSI codes.

Internal helper to render content with HTML.

Returns the repository root path.

Initialize a repository at `root` and record+apply a single file on the default `dev` view, returning the opened repository.

Set request ID.

Open a repository or return a user-friendly error. This is a convenience wrapper around [`open_repository`] that provides more context in error messa

Mark a human gate as resolved. Updates the gate node's detail and clears the pending gate state. The next node appended after this will get a `Resume

Resolve a flexible identity reference to a UUID. Accepts: - A UUID string (passed through directly) - An email address (contains `@` — resolved via s

Resolve an inode position to an actual Inode value. Given a position referencing a file's inode span, looks up the actual Inode value from the positi

Resolve the best available LLM provider from environment.

Resolve the org slug using the legacy (single-server) config path. Kept for callers that don't yet pass a server override.

Resolve a file path to its inode. This function looks up the stable file identifier (inode) for a given path in the repository tree. # Arguments `c

Restores a deleted leaf to alive.

Retrieve content from the pristine graph. This is the main entry point for retrieving file content from the graph. It handles the full pipeline of re

Retrieve content with a change filter, also reporting whether retrieval had to resolve fork/cyclic structure to produce it. Like [`retrieve_content_w

Like [`retrieve_content_with_filter_fast`], but also reports whether retrieval had to resolve fork/cyclic structure to produce the content. The inode

Builder: set reverse order.

Get a reverse history log (most recent first). # Arguments `options` - Options controlling the history query # Returns A vector of history entries

Get the root directory path.

Execute stash push (save changes).

Set the salt for name conflict resolution.

Save the provenance accumulator for a session. Best-effort: failures are logged but never fatal.

Save an identity with its secret key.

Save an identity with optional secret key.

Produce a single-layer (flattened) OCI image of the full merged state of `view`. Because a draft view sees its entire parent chain, the materialized

Read only SEMANTIC sections, skipping everything else. This is the "thin review" pattern: read only the display/analysis layer for code review, diff

* Update the model and provider for a session. * * Called from the `chat.message` hook when model info is available. * Only updates fields th

* Store the most recent user prompt for a session. * * Called from the `chat.message` hook. Only updates if `prompt` * is a non-empty string.

Set bytes added.

Set the content range (byte positions in the change content buffer). This is called during globalization to link the CRDT branch to its corresponding

Set the current content hash.

Set a remote as the default. # Arguments `name` - The name of the remote to set as default # Errors Returns an error if the remote doesn't exist.

Set dependency count.

Set additional details.