Builder: set the timeout in seconds.

Set whether to include untracked files.

Compute word-level diff with custom configuration. # Arguments `old` - The original content `new` - The modified content `config` - Configuration op

Write a change to the graph and add it to a view's change log. This function handles two cases: 1. **New change**: The change hasn't been applied to

Updates statistics with a line change.

Add a change that connected to this span.

Add a change that deleted this span.

Add a dependency. # Arguments `hash` - The dependency hash

Add an error message.

Add an extra child to a span. Extra children are stored directly on the span rather than in the shared array. This is useful when edges are discovere

Add a hook command to a matcher list, creating the matcher if needed.

Add a pending change, potentially combining with existing ones.

Add a spinner to a multi-progress container. # Arguments `mp` - The multi-progress container `message` - The spinner message

Add a zombie conflict.

Record a zombie span by its span.

Adjust all operation offsets by adding to the positions. This is used after stripping common prefixes to restore correct positions.

Set the AI vendor identifier.

Allocate a new branch ID.

Allocates a new branch ID.

Allocates a new leaf ID.

Allocates a new leaf ID.

Set whether to allow conflicts.

Set whether to allow conflicts.

Convert [`ToolMessage`] list into Anthropic's messages array.

Append a [`TraceRecord`] as a single JSON line to `{root}/.agent-trace/traces.jsonl`. Creates the directory and file if they don't exist. All errors

Set whether to insert dependencies automatically.

Apply FileOps using CRDT table handles opened once for the full pass. This is a specialized fast path for insert-only workloads such as large initial

Mark as a dry run result.

Assemble a change from recorded files. This is the main entry point for creating a Change from recording results. It globalizes all hunks, collects d

Attach a Bearer JWT auth header to the remote config. `identity_override` — if provided, this identity name is used directly, bypassing URL-based inf

Get the filesystem path for an attestation with the given hash. Attestations use the same two-level directory structure as changes but with the `.att

Begin a conflict region (order conflict). # Arguments `id` - Unique ID for this conflict `changes` - Optional change hashes for the first side

Bootstrap vault tables from an existing `.vault/` working copy. Called after pull/clone when `.vault/` files exist on disk (materialized from the gra

Build (or rebuild) the content search index for the repository. Indexes all files in the working copy, respecting `.gitignore` and `.atomicignore` pa

Build CRDT FileOps directly from git diff lines. This is the authoritative path for git import: instead of re-running our Myers diff algorithm (which

Create [`NewEdge`] deletion entries for each vertex. For every content vertex we: 1. Find its predecessor via PARENT edges. 2. Create a `BLOCK | DELE

Build a human-readable summary of file changes from the repository status. Groups changes by kind and lists filenames (not full paths) to keep the me

Build a ChangeHeader from options and explicit header. The explicit header takes precedence, but the options message can override an empty header mes

Build a `ChangeHeader` for an agent turn. The message is built from the file changes and prompt context: - Good prompt: `"Fix the authentication bug

Classify an imported commit as normal, merge, or squash.

Clear context positions (up and down).

Collect all files in a directory for tracking, with optional ignore rules. This is the full version that accepts optional [`IgnoreRules`] for pattern

Collect children from the tree under a given path. This function traverses the TREE table to find all files and directories under the specified paren

Collect working copy state for a specific set of paths. This is more efficient than full collection when you already know which paths to check (e.g.,

Convert an `Atom<Option<Hash>>` to a [`CompactAtom`].

Convert an `EdgeUpdate<Option<Hash>>` to a [`CompactEdgeUpdate`].

Convert a `NewEdge<Option<Hash>>` to a [`CompactNewEdge`].

Update statistics based on hunks.

Concatenate another EdgeUpdate's edges into this one. Note: The inode must match (this is the caller's responsibility).

Condense a transcript from raw bytes, auto-detecting format. Currently supports Claude Code JSONL. Future: Gemini JSON, other formats.

Iterate over conflicted files.

Copy a content span from a change without cloning the full `Change`. Graph output calls this for every vertex it materializes. Using `load_change()`

Set cost in USD.

Create a chain of per-line content vertices. Splits `content` on newline boundaries and creates one [`Insertion`] per line, chained via predecessor/s

Create token changes for a line that was entirely deleted.

Helper to build IntentCreateOptions for a specific session/turn.

Create a temporary directory for testing.

Creates a new trunk (file). Allocates an inode and stores the trunk. # Arguments `id` - The trunk ID `path` - The file path `encoding` - Optional t

Create a [`FileWatcher`] using the best available backend. Attempts to connect to Watchman first. If Watchman is not running or the connection fails,

Delete a change from disk and the cache. # Arguments `hash` - The hash of the change to delete # Returns `true` if the change was deleted, `false`

Marks a file for deletion.

Get only deleted files.

Returns a short description of this conflict kind.

Get additional details about the status.

Detect which registered agents are present in the given repository. Calls `detect_presence()` on each registered agent and returns the names of agent

Detect fork conflicts in the alive graph. A fork is a vertex with ≥2 children that reside in different SCCs (i.e. there is no ordering between them).

Pick the best recipe for `ctx`. Walks the `RULES` table top-to-bottom; the first rule whose predicate matches selects its recipe. Falls back to [`Re

Disable cleanup. Call this when the operation succeeds and you don't want the directory to be removed. # Example ```rust use atomic::commands::clon

Create a dry-run push outcome.

Set the API processing duration in milliseconds.

Set the wall clock duration in milliseconds.

Format emphasized text in bold. Use this to emphasize important text. # Arguments `text` - The text to emphasize # Returns A styled object that d

Convert Encoding to u8 for storage.

End a conflict region. # Arguments `id` - The conflict ID (must match the begin call)