Print file names with status.

Print a message when there are no changes.

Print a reasoning summary in a readable format.

Print the diff in stat format.

Print the diff in unified format.

Set the schema profile identifier. Use [`super::SHERPA_PROFILE`] for Sherpa-structured graphs. Omit for generic agent graphs — `profile` defaults to

Get the corresponding public key

Record a successfully applied change.

Convenience: map a [`atomic_remote::RemoteError`] to a [`CliError`].

Remove all Atomic hooks from a matcher list. Preserves non-Atomic hooks. Removes empty matchers (those with no remaining hooks after Atomic hooks are

Rename a remote. # Arguments `old_name` - The current name of the remote `new_name` - The new name for the remote # Errors Returns an error if: -

Look up an agent adapter by name, returning an error if not found. This is a convenience method for CLI commands that need to validate the agent name

Attempt to resolve conflicts using the semantic merge engine. Handles two kinds of conflict: 1. **Cyclic conflicts** — multi-vertex SCCs where Tarja

Resolve a node_id that may be a `$variable` reference. If it starts with `$`, look up the binding and extract node IDs. Otherwise return it as-is.

Resolve the target path to an absolute path. If the path is relative, it's resolved relative to the current working directory.

Convert an external position (with Hash) to an internal position (with NodeId). This is the bridge between the serialized change format (using hashes

Resolve the target path for cloning. If `path` is provided, uses that. Otherwise, infers from the URL. # Arguments `url` - The remote URL `path` -

Restore a single file according to its status. - `Added` (tracked but not recorded): undo tracking. The file stays on disk and becomes untracked, so

Retrieve content with options. Like `retrieve_content`, but allows configuration via options. # Arguments `txn` - Transaction providing graph acces

Inner runner that takes the slug-verification step as a parameter. Splitting this out lets tests inject a deterministic verifier (succeed / fail) wit

Save remote configuration to a config file. This preserves other sections in the config file and only updates the `[remotes]` section. # Arguments

Save the store configuration.

Set the encoding.

Set the inode.

Set the change kind.

Sets the trunk's path (for move operations).

Check if a path should be ignored during tracking, with optional ignore rules. This is the full version that accepts optional [`IgnoreRules`] for pat

Get the conversion statistics.

Return statistics about the table for debugging and logging. # Examples ```rust use atomic_core::change::format_v3::HashDedupTable; let mut table =

Returns a human-readable suggestion for how to fix this error. This is intended for CLI error reporting where a "did you mean?" style hint can guide

Convert to file output options.

Format this entry as a protocol line.

Serialize to the full JSON-compatible representation.

Get all tracked paths under a directory prefix. # Arguments `txn` - A transaction (read or write) `prefix` - The directory prefix to search under

Advance the state machine to at least the given state. This handles the forward transitions: if we're in WritingMetadata and asked to write a SEMANTI

Truncate a string for summary display, adding "..." if truncated.

Truncate a prompt to the given maximum length, adding "..." if needed.

Limit changes to those up to and including a tag.

Update directory flags (default: delete + re-add).

Store mtime + size + content hash for a batch of files in a single transaction. This populates the file index so that `status` can compare file metad

Update the largest file size if this file is larger. # Arguments `size` - The file size in bytes

Link a goal to an intent.

List vault intents. Optionally filtered by status. Pass `Some("all")` or `None` for all intents.

Get the neighborhood subgraph around a node.

Full-text search over knowledge graph nodes. `pool` controls the candidate heap size — how many nodes are scored before the top `limit` are selected.

Verify that chunks form a contiguous, non-overlapping cover of the data.

Check if a view exists. # Arguments `name` - The name of the view to check

Execute `f` while holding an exclusive file lock on the session's accumulator. The lock file is `{session_dir}/graph.lock`. The callback receives a

Set the diff algorithm. # Arguments `algorithm` - Algorithm to use for content comparison # Example ```rust use atomic_core::record::DetectOptions

Set the diff algorithm. # Arguments `algorithm` - Algorithm to use for content comparison # Example ```rust use atomic_core::record::workflow::Wor

Set whether to use mtime optimization. # Arguments `check` - Whether to check mtime before comparing content

Mark as having conflicts.

Set cost in USD.

Builder: set the `--dry-run` flag.

Builder: set the force flag.

Builder: set the force flag.

Set input tokens.

Builder: set the insecure flag.

Builder: set the keep flag (legacy, now the default).

Builder: set the project kind for .atomicignore template.

Builder: set the local state.

Builder: set the message.

Set the change message. The message is typically the first line of the change description, used for display purposes. # Arguments `message` - The c

Builder: set the message.

Sets the modification detection threshold. Lines with similarity above this threshold are classified as "modified" rather than "deleted and inserted"

Builder: set the name-status flag.

Builder: set the target path.

Set the reasoning summary.

Builder: set the remote name or URL.

Builder: set the remote name or URL.

Builder: set reverse order.

Builder: set the reword flag.

Builder: set the skip-binary flag.

Set the tagged flag. Tagged changes represent named snapshots in the history. When a change is tagged, the pull operation will also download the asso

Builder: set the timeout in seconds.

Builder: set the timeout in seconds.