Check if the tracker is empty.

True if `path` lives in an Atomic-internal directory that must never be enriched into the knowledge graph or indexed for content search. Covers the a

Determine if a declaration is exported (publicly visible). Walks the immediate children of the declaration node looking for access-level modifiers. S

Check if this error is because a path is ignored

Get the number of signatures.

Lift the given inputs into a canonical `MemoryNode`, mapping a lift failure (missing `uid`, missing `memoryKind`, …) to a clean argument error.

List tracked files eligible for knowledge-graph enrichment. Filters [`list_tracked_files`](Self::list_tracked_files) to exclude: - Atomic/Git interna

List tags in a specific view.

List all tracked files. # Arguments `txn` - A transaction (read or write) # Returns A vector of all tracked files and directories.

Create a short prefix from a session ID for use in node IDs. Takes up to the first 8 characters. If the session ID is a UUID, this is the first segme

Order manifests so every parent is applied before its children. A manifest is ready when its declared parent is `None` (a root view), already applied

Check if an identity matches this filter.

Merge another outcome into this one. This is useful when collecting results from multiple output operations (e.g., outputting different subtrees). #

Merge results from a file output.

Merge new items into existing section headings without duplicating headings. If `### Repo` already exists in the section, new repo items are appended

Merge `source` paths into `target`, deduplicating.

Iterate over modified files.

Iterate over modified lines.

Normalize a path by resolving `.` and `..` components. Unlike `canonicalize()`, this doesn't require the path to exist.

Parent lookup backed by a map, for pure chain tests.

Parse the algorithm string into an Algorithm enum.

Parse the algorithm string into an Algorithm enum.

Parse the author string into an Author struct.

Parse a changelist response into entries.

Parse `atomic git push` trailers from a commit message. Only matches when the trailers form the message's final paragraph — the shape `atomic git pus

Check if a change ID passes the filter. Returns true if: - No filter is set (all changes pass) - The change_id is ROOT (NodeId(0), always passes) - T

Add a permission.

Print a section header. Use this to visually separate different sections of output. # Arguments `title` - The section title # Example ```rust,ign

Print the status in short (porcelain) format.

Process a deletion. # Arguments `old_index` - Starting line in old content `new_index` - Position in new content (deletion point) `old_len` - Number

Returns the prompt truncated to `max_len` characters. Useful for display purposes (commit messages, UI previews). Returns `None` if no prompt is pres

Record a single deleted file. Creates a deletion graph_op for a file that no longer exists in the working copy. # Arguments `detected` - The detect

Record a successfully downloaded change. Increments the download counter. # Example ```rust use atomic::commands::clone::types::CloneProgress; let

Register an entity in the identity tables. Creates INTERNAL (hash → id), EXTERNAL (id → hash), and NODE_TYPES (id → type) entries. Returns existing i

Rename a file or directory.

Interpret the result of `get_view_manifest`, turning "server predates manifest support" into a hard, actionable error. Identity-preserving push has n

Resolve the agent author for a turn change. Looks up the user's default identity and derives an agent author with a `+tag` email. Falls back to a pla

Load candidate bodies from the vault, score, and rank them.

Attempt to resolve conflicts using the semantic merge engine. Handles two kinds of conflict: 1. **Cyclic conflicts** — multi-vertex SCCs where Tarja

Resolve the destination path. If destination is a directory, append the source filename.

Resolve the best available embedding provider from environment.

Extract the identity name from a remote URL alone (no server config). Tries URL userinfo first (`bob@host`), then the subdomain (`bob.host`). This is

Resolve the identity name to authenticate as. Priority: 1. An explicit override (the `--identity` flag). 2. URL userinfo (`http://bob@host/...`). 3.

Resolve the effective server config, honouring the optional name override. Resolution order: 1. `server_override` (from `--server <name>` CLI flag) 2

Resolve the workspace slug for a command, with fallback to the org-scoped default workspace from the **active** server profile. Loads global config,

Compute a row with an explicit verifier keypair (no global store).

Inner runner that takes the slug-verification step as a parameter. Splitting this out lets tests inject a deterministic verifier (succeed / fail) wit

Inner runner that takes the slug-verification step as a parameter. Splitting this out lets tests inject a deterministic verifier (succeed / fail) wit

Lowercased, deduplicated terms using KG FTS rules plus a small allowlist of meaningful short technology names. Exact token matching prevents substring

Node id for a session ledger.

Set the CRDT build statistics.

Set the current view (internal, does not update working copy). Update the view pointer on disk without materializing. This updates both the in-memor

Set the inode.

Attach the managed-run context for this hook invocation (see [`ManagedRunContext`]).

Set the AI vendor and model.

Returns `true` for machine-generated files (lockfiles, checksums, bundled output) that should be treated as opaque blobs — skipping CRDT tokenization

Strip markdown code block wrappers from a JSON string. Claude sometimes wraps JSON in ```json ... ``` blocks despite being asked not to. This strips

Convert this entry to a Node. Respects the `tagged` field: tagged entries become `Node::tag`, regular entries become `Node::change`.

Convert the accumulated graph to a content-addressed `ProvenanceGraph` suitable for storage in the Atomic graph alongside changes and attestations. P

Convert to retrieve options for the alive graph module.

Tokenize a single file's content. This runs on a rayon worker thread for parallel regeneration.

The `urn:atomic:triage:<blake3-hex>` reference for a set of pins. `candidate_changes` is sorted before hashing so a triage over the same set of chang

Store mtime + size + content hash for a batch of files in a single transaction. This populates the file index so that `status` can compare file metad

Reconcile lifecycle metadata for a session record. Called from agent session start/end hooks. Creates the record if the session has no ledger entries

Ensure a grant mutation targets a concrete user or team. `Everyone` is emitted by Storage when listing public grants, but the mutation endpoints requ

Validate a session ID to prevent path traversal. Rejects IDs containing `..`, `/`, `\`, or null bytes.