Add a missing context conflict.

Add an unchanged file to the result.

Set the human-readable agent display name.

Appends content to the buffer and returns the byte range.

Append a human gate node (permission requested). Returns the new node's ID.

Get the separator as a byte slice.

Wrap a local id into `urn:atomic:<kind>:<local>` unless already a urn.

Attach unhashed turn data to a change. Serializes `UnhashedTurnData` as JSON and stores it under the `"agent_turn"` key in `change.unhashed`. Creates

The tracked-vault path for an intent's attestation: `attestations/<sanitized-normalized-id>/attested.md`.

Add multiple authors.

Build the delegation scope.

Build a Go-like source file with `count` distinct top-level functions, each with a unique, greppable marker line. Mirrors the shape of the real-world

Build a graph where the vertex at `parent_idx` has the given child vertex indices. Vertices are pushed in order 0..N where 0 is DUMMY.

Return a deterministic, causality-aware ordering for a session's turns. Stored provenance can arrive in any order (for example during pull). A timest

Collect all change `NodeId`s inserted into a view into a `HashSet`. This is the canonical helper for building a **change filter** — the set of change

The `blake3:<hex>` content hash of a JSON value's canonical form.

Returns the number of registered agents.

Create a directory and all parent directories.

Create a multi-progress container for parallel progress bars. A [`MultiProgress`] allows displaying multiple progress bars simultaneously, useful for

Create a test change with some content.

Remove learnings that already exist in the context file. Returns a new `Learnings` with only the Repo and Workflow entries that are not already prese

The default intent classification. An ordinary unit of work is a `"feature"`.

Set an optional description.

Get additional details about the status.

Detect the encoding of content. Analyzes content to determine if it's valid UTF-8 text or binary data. # Arguments `content` - The content to analy

Format emphasized text in bold. Use this to emphasize important text. # Arguments `text` - The text to emphasize # Returns A styled object that d

Mark the end of the current turn and increment the turn count. Returns the turn number that just completed (1-indexed).

Get the file extension for this format.

Extract unhashed turn data from a change. Returns `None` if the change has no unhashed data or no `"agent_turn"` key.

Build a fake package in a tempdir: manifest + two files + a settings manifest. Returns (pkg_dir, dst_dir) tempdirs.

Get metadata for a file or directory.

Filter to a specific path prefix.

Recompute the contents hash after modifying contents.

Find all provenance graphs that explain a specific change. Uses REV_DEPS to find nodes that depend on the given change, then filters by `node_type::P

Indices of unclassified tool-derived nodes grouped into sequences separated by structural boundaries (goals, patches, human gates, errors).

Find lines that appear exactly once in both sequences and match. Returns a list of matches sorted by position in the old sequence.

Finish a progress bar with an error message. This clears the progress bar and displays an error message in red. # Arguments `pb` - The progress bar

Format condensed entries as human-readable text. Output format: ```text [User] Fix the auth bug in login.rs [Assistant] I'll fix the token validation

Format learnings as individual list items grouped by category. Only includes **Repo** and **Workflow** learnings. Code learnings (with file:line refe

Format entries for oneline output. # Arguments `entries` - History entries to format `hash_length` - Number of hash characters to display # Returns

Format the change for short output.

Build hunks from a diff result with context lines. This function groups diff operations into hunks with the specified number of context lines around

Gather candidate memory nodes from all seeds. Returns a map of memory node id -> accumulated candidate score. With no seeds at all, falls back to the

Generate diff operations between two content blobs. Converts content to lines and runs the specified diff algorithm. # Arguments `old_content` - Ol

Get the default remote, if one is configured. Returns the first remote marked as default, or "origin" if it exists and no other default is set. # Ex

Get the raw contents of a file. Returns `None` if the file doesn't exist or is a directory. # Example ```rust use atomic_core::output::Memory; let

Get the message for the revised change.

Get the global configuration directory. Resolution order: 1. The `ATOMIC_CONFIG_DIR` environment variable, if set — used verbatim as the config direc

Wrap an `atomic agent hooks …` invocation in the shell guard that installed hooks run behind. The hook must only fire where Atomic's graph is reachab

The value covered by the content hash: excludes both `proof` and `contentHash` (you cannot hash the hash).

Format a hint/suggestion message in dim style. Use this for supplementary information, suggestions, or less important details. # Arguments `text` -

Filter by identity type.

Set whether to include deleted content.

Set whether to include deleted vertices. # Arguments `include` - Whether to include deleted content # Example ```rust use atomic_core::output::rep

Initialize the embeddings table.

A fresh repository with an initialized vault.

Creates a line insert operation with leaf operations. # Arguments `branch_id` - The branch ID for this new line `after` - Insert after this branch I

Mark a vertex as "skip" — it belongs to a resolved SCC but is not the lead vertex.

Returns true if the token is alive (not deleted).

Check if this status represents a change that needs to be recorded. Returns `true` for statuses that indicate uncommitted changes.

Check if the builder is empty (no changes recorded). # Returns `true` if no hunks have been recorded yet.

Check if no files were collected.