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Types & classes454 in github.com/arq5x/bedtools2

⨍ Functions 2,929◇ Types & classes 454

↓ 16 callersClassstring

src/utils/general/QuickString.h:18

↓ 6 callersClassBED

Structure for regular BED records */

src/utils/bedFile/bedFile.h:72

↓ 4 callersClassstat

src/utils/htslib/cram/files.c:50

↓ 3 callersClassMock

docs/conf.py:228

↓ 3 callersClassstat

src/utils/htslib/cram/cram_io.c:1624

↓ 2 callersClassstat

src/utils/htslib/tabix.c:508

↓ 2 callersClassstat

src/utils/htslib/hts.c:2887

↓ 2 callersClassstat

src/utils/htslib/bgzip.c:152

↓ 2 callersClassstat

src/utils/htslib/cram/mFILE.c:75

↓ 2 callersClassstat

src/utils/Fasta/Fasta.cpp:46

↓ 1 callersClassChromSweep

src/utils/chromsweep/chromsweep.h:26

↓ 1 callersClassCigarOp

src/utils/BamTools/include/BamAlignment.hpp:35

↓ 1 callersClassCompareByWeight

src/utils/bedFile/bedFile.cpp:799

↓ 1 callersClassDistanceTupleSortAscFunctor

src/utils/NewChromsweep/CloseSweep.h:26

↓ 1 callersClassFastaIndexEntry

src/utils/Fasta/Fasta.h:31

↓ 1 callersClassReadOnlyPropertyMapping

src/utils/BamTools/mapping/BamAlignment.py:23

↓ 1 callersClassRecordPtrSortAscFunctor

src/utils/FileRecordTools/Records/Record.h:222

↓ 1 callersClassRefData

src/utils/BamTools/include/api/BamAux.h:6

↓ 1 callersClassSamHeader

src/utils/BamTools/include/SamHeader.hpp:53

↓ 1 callersClassSimplePropertyMapping

src/utils/BamTools/mapping/BamAlignment.py:2

↓ 1 callersClassValueGreaterThan

src/utils/VectorOps/VectorOps.cpp:39

↓ 1 callersClassValueLessThan

src/utils/VectorOps/VectorOps.cpp:48

↓ 1 callersClass_MetaData

src/utils/BamTools/include/BamReader.hpp:113

↓ 1 callersClassgzstreambase

src/utils/gzstream/gzstream.h:74

↓ 1 callersClassstat

src/utils/fileType/fileType.cpp:23

↓ 1 callersClassstat

src/utils/FileRecordTools/FileReaders/InputStreamMgr.cpp:77

↓ 1 callersClassstat

src/regressTest/RegressTest.cpp:434

Structure for regular BED COVERAGE records */

src/utils/bedFile/bedFile.h:186

ClassBEDCOVLIST

Structure for BED COVERAGE records having lists of multiple coverages */

src/utils/bedFile/bedFile.h:234

src/utils/bedGraphFile/bedGraphFile.h:48

Structure for paired-end records */

src/utils/bedFilePE/bedFilePE.h:21

src/utils/htslib/bgzf.c:2091

src/utils/htslib/hfile_internal.h:53

src/utils/htslib/htslib/hts.h:42

src/utils/htslib/htslib/bgzf.h:60

src/utils/general/BTlist.h:34

ClassBTlistNode

src/utils/general/BTlist.h:37

ClassBamAlignment

src/utils/BamTools/include/BamAlignment.hpp:67

ClassBamFileReader

src/utils/FileRecordTools/Records/BamRecord.h:17

ClassBamFileReader

src/utils/FileRecordTools/FileReaders/BamFileReader.h:16

src/utils/BamTools/include/BamReader.hpp:40

src/utils/FileRecordTools/Records/BamRecord.h:20

src/utils/BamTools/include/api/BamAux.h:18

ClassBamToFastq

Class methods and elements

src/bamToFastq/bamToFastq.h:29

src/utils/BamTools/include/BamWriter.hpp:12

ClassBed12Interval

src/utils/FileRecordTools/Records/Bed12Interval.h:17

Class methods and elements

src/fastaFromBed/fastaFromBed.h:28

ClassBed3Interval

src/utils/FileRecordTools/Records/Bed3Interval.h:19

ClassBed4Interval

src/utils/FileRecordTools/Records/Bed4Interval.h:17

ClassBed5Interval

src/utils/FileRecordTools/Records/Bed5Interval.h:16

ClassBed6Interval

src/utils/FileRecordTools/Records/Bed6Interval.h:16

ClassBedAnnotate

Class methods and elements

src/annotateBed/annotateBed.h:28

ClassBedCluster

Class methods and elements

src/clusterBed/clusterBed.h:28

BedFile Class methods and elements

src/utils/bedFile/bedFile.h:376

BedFile Class methods and elements

src/utils/bedFilePE/bedFilePE.h:50

Class methods and elements

src/flankBed/flankBed.h:28

ClassBedGenomeCoverage

Class methods and elements

src/genomeCoverageBed/genomeCoverageBed.h:39

ClassBedGraphFile

BedGraphFile Class methods and elements

src/utils/bedGraphFile/bedGraphFile.h:103

ClassBedGraphInterval

src/utils/FileRecordTools/Records/BedGraphInterval.h:16

EnumBedGraphLineStatus

enum to flag the state of a given line in a BEDGraph file.

src/utils/bedGraphFile/bedGraphFile.h:91

ClassBedIntersectPE

Class methods and elements

src/pairToBed/pairToBed.h:40

EnumBedLineStatus

enum to flag the state of a given line in a BED file.

src/utils/bedFile/bedFile.h:278

Class methods and elements

src/linksBed/linksBed.h:23

ClassBedPlusInterval

src/utils/FileRecordTools/Records/BedPlusInterval.h:16

Class methods and elements

src/randomBed/randomBed.h:32

Class methods and elements

src/shiftBed/shiftBed.h:26

ClassBedShuffle

Class methods and elements

src/shuffleBed/shuffleBed.h:31

Class methods and elements

src/slopBed/slopBed.h:28

Class methods and elements

src/sortBed/sortBed.h:26

Class methods and elements

src/split/splitBed.h:26

ClassBedSplitItems

src/split/splitBed.cpp:43

Class methods and elements

src/windowBed/windowBed.h:30

ClassBedtoolsDriver

src/utils/driver/BedtoolsDriver.h:4

src/utils/BinTree/BinTree.h:30

src/intersectFile/intersectFile.h:21

src/complementFile/complementFile.h:16

src/mergeFile/mergeFile.h:16

src/utils/RecordOutputMgr/RecordOutputMgr.h:17

src/utils/FileRecordTools/Records/BlockMgr.h:23

src/intersectFile/intersectFile.h:20

src/complementFile/complementFile.h:15

src/mergeFile/mergeFile.h:15

ClassBufferedStreamMgr

src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h:16

ClassBufferedStreamMgr

src/regressTest/RegressTest.h:19

EnumCOORDINATE_TYPE

src/utils/Point/Point.h:18

ClassChromIdLookup

src/utils/FileRecordTools/Records/Record.h:23

ClassCloseSweep

src/utils/NewChromsweep/CloseSweep.h:80

ClassClosestFile

src/closestFile/closestFile.h:15

ClassComplementFile

src/complementFile/complementFile.h:20

EnumCompressionMode

src/utils/BamTools/include/BamWriter.hpp:16

ClassContextBase

src/utils/ToolBase/ToolBase.h:16

ClassContextBase

src/utils/Contexts/ContextBase.h:30

ClassContextClosest

src/utils/Contexts/ContextClosest.h:14

ClassContextComplement

src/utils/Contexts/ContextComplement.h:14

ClassContextCoverage

src/utils/Contexts/ContextCoverage.h:14

ClassContextFisher

src/utils/Contexts/ContextFisher.h:14

ClassContextGroupBy

src/utils/Contexts/ContextGroupBy.h:13

ClassContextIntersect

src/utils/Contexts/ContextIntersect.h:13

ClassContextIntersect

src/utils/NewChromsweep/NewChromsweep.h:29

ClassContextJaccard

src/utils/Contexts/ContextJaccard.h:13

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