Functions — github.com/aqlaboratory/proteinnet

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Functions7 in github.com/aqlaboratory/proteinnet

⨍ Functions 7 ◇ Types & classes 1

↓ 3 callersFunctionletter_to_num

Convert string of letters to list of ints

code/text_parser.py:45

↓ 1 callersFunctionmasking_matrix

Constructs a masking matrix to zero out pairwise distances due to missing residues or padding. Args: mask: 0/1 vector indicating whethe

code/tf_parser.py:14

↓ 1 callersFunctionread_record

Read a Mathematica protein record from file and convert into dict.

code/text_parser.py:52

code/text_parser.py:26

Return the match method once, then stop

code/text_parser.py:30

Indicate whether or not to enter a case suite

code/text_parser.py:35

Functionread_protein

Reads and parses a ProteinNet TF Record. Primary sequences are mapped onto 20-dimensional one-hot vectors. Evolutionary sequences a

code/tf_parser.py:34