Functions — github.com/andreariba/DeepCycle

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Functions18 in github.com/andreariba/DeepCycle

⨍ Functions 18 ◇ Types & classes 2

↓ 2 callersMethodconfidence_level

DeepCycle.py:242

↓ 2 callersMethodhessian_estimation

DeepCycle.py:192

↓ 2 callersFunctionplot_training

DeepCycle.py:427

↓ 1 callersMethod__init__

(self, x, y, dt, eta)

DeepCycle.py:84

↓ 1 callersFunctionadd_cell_cycle_scores

(adata, gene_phase_dict)

scripts/estimate_cell_cycle_transitions.py:48

↓ 1 callersMethodcalculate_potential_force

DeepCycle.py:135

↓ 1 callersFunctionestimate_phase_transitions

scripts/estimate_cell_cycle_transitions.py:91

↓ 1 callersMethodfind_minima

DeepCycle.py:154

↓ 1 callersFunctionfit_A

scripts/fit_ISMARA.py:75

↓ 1 callersFunctiongenerate_input

(list_of_genes, adata)

DeepCycle.py:348

↓ 1 callersMethodplot_density

(self,file=None)

DeepCycle.py:207

↓ 1 callersMethodpotential_estimation

DeepCycle.py:125

(self, input_dim=1)

DeepCycle.py:254

DeepCycle.py:257

DeepCycle.py:329

Functionl_optimization_func

(l, E, N, indices)

scripts/fit_ISMARA.py:54

Functionoptimize_l

scripts/fit_ISMARA.py:64

Functionprocess_gene

(gene, adata=adata, hot_dir=hot_dir)

DeepCycle.py:281