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Functions40,422 in github.com/ablab/spades

⨍ Functions 40,422◇ Types & classes 24,500↳ Endpoints 21
↓ 90 callersMethodfind
src/projects/spades/series_analysis.cpp:122
↓ 90 callersMethodsize
src/projects/online_vis/history.hpp:40
↓ 89 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDMatMapExpr.h:560
↓ 89 callersFunctionconj
Type of the operand
ext/include/blaze/blaze/math/simd/Conj.h:64
↓ 89 callersMethodempty
src/projects/pathracer/pathtree.hpp:232
↓ 89 callersFunctionesl_rsq_xfIID
ext/src/easel/esl_randomseq.c:788
↓ 89 callersFunctionesl_sqfile_Close
Function: esl_sqfile_Close() * Synopsis: Close a sequence file. * * Purpose: Closes an open <sqfp>. * * Returns: (void). */
ext/src/easel/esl_sqio.c:98
↓ 89 callersMethodremove
src/common/assembly_graph/index/edge_position_index.hpp:60
↓ 89 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatMultExpr.h:356
↓ 89 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDMatMapExpr.h:550
↓ 89 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DMatDVecMultExpr.h:314
↓ 89 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDVecTDMatMultExpr.h:313
↓ 89 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDVecDMatMultExpr.h:316
↓ 89 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDMatDVecMultExpr.h:315
↓ 88 callersFunctionend
ext/src/llvm/Path.cpp:233
↓ 88 callersFunctionesl_stopwatch_Display
Function: esl_stopwatch_Display() * * Purpose: Output a usage summary line from a stopped * stopwatch, showing elapsed, cpu, and syst
ext/src/easel/esl_stopwatch.c:190
↓ 87 callersFunctionend
Type of the dense matrix
ext/include/blaze/blaze/math/proxy/DenseMatrixProxy.h:814
↓ 87 callersFunctionesl_randomness_Create
Function: esl_randomness_Create() * Synopsis: Create the default strong random number generator. * * Purpose: Create a random number generator
ext/src/easel/esl_random.c:89
↓ 87 callersMethodsize
! \cond BLAZE_INTERNAL */ !\brief Returns the current size/dimension of the subvector. // // \return The size of the subvector. */
ext/include/blaze/blaze/math/views/subvector/SubvectorData.h:183
↓ 87 callersFunctionsubvector
Optional arguments
ext/include/blaze/blaze/math/expressions/DVecGenExpr.h:757
↓ 87 callersMethodvalue
ext/include/boost/bind/bind.hpp:102
↓ 86 callersMethodcount
src/common/modules/simplification/topological_edge_conditions.hpp:232
↓ 86 callersFunctionfloor
ext/include/blaze/blaze/math/proxy/Proxy.h:1107
↓ 86 callersFunctionget
src/common/io/binary/binary.hpp:303
↓ 85 callersMethodTimes
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:3015
↓ 85 callersFunctionzerofy
1.0-a-b operations below can result in -epsilon or +epsilon. Round these to 0. */
ext/src/hmmer/src/itest_brute.c:289
↓ 84 callersFunctiontrans
ext/include/blaze/blaze/math/proxy/Proxy.h:1211
↓ 83 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTDMatMultExpr.h:357
↓ 83 callersFunctionesl_FCompare_old
ext/src/easel/easel.c:2399
↓ 83 callersFunctionisDivisor
Transpose flag
ext/include/blaze/blaze/math/dense/DenseVector.h:1261
↓ 83 callersMethodleft
ext/include/boost/multi_index/detail/ord_index_node.hpp:619
↓ 83 callersMethodname
ext/src/llvm/Error.cpp:30
↓ 82 callersFunctionAPInt
Fast internal constructor This constructor is used only internally for speed of construction of temporaries. It is unsafe for general use so it is no
ext/include/llvm/ADT/APInt.h:107
↓ 82 callersFunctionbegin
ext/src/llvm/Path.cpp:224
↓ 82 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TDMatSMatMultExpr.h:370
↓ 82 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatMultExpr.h:366
↓ 82 callersFunctionesl_fileparser_GetTokenOnLine
Function: esl_fileparser_GetTokenOnLine() * Incept: SRE, Tue Apr 3 08:46:59 2007 [Janelia] * * Purpose: Same as <esl_fileparser_GetToken()>,
ext/src/easel/esl_fileparser.c:399
↓ 82 callersMethodkeys
ext/src/llvm/YAMLTraits.cpp:140
↓ 82 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTDMatMultExpr.h:361
↓ 82 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTDMatMultExpr.h:347
↓ 82 callersFunctionset
ext/include/clipp/clipp.h:1101
↓ 81 callersMethodGetString
Gets the text streamed to this object so far as an std::string. Each '\0' character in the buffer is replaced with "\\0".
ext/src/googletest/googletest/src/gtest.cc:1338
↓ 81 callersMethodmapRequired
ext/include/llvm/Support/YAMLTraits.h:852
↓ 81 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatDMatMultExpr.h:361
↓ 81 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatSchurExpr.h:384
↓ 80 callersMethodget_node
ext/include/boost/multi_index/detail/safe_mode.hpp:492
↓ 80 callersMethodlowerBound
LowerBound function !\brief Returns an iterator to the first index not less then the given index. // // \param index The index of the search ele
ext/include/blaze/blaze/math/expressions/SVecMapExpr.h:391
↓ 80 callersMethodright
ext/include/boost/multi_index/detail/ord_index_node.hpp:621
↓ 80 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatDMatSchurExpr.h:384
↓ 80 callersMethodsize
Size routines.
src/common/paired_info/histogram.hpp:87
↓ 80 callersMethodsize
src/common/assembly_graph/core/id_storage.hpp:73
↓ 80 callersMethodstore
Compile time submatrix arguments
ext/include/blaze/blaze/math/views/submatrix/Dense.h:2444
↓ 79 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTSMatSchurExpr.h:394
↓ 79 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatDMatSchurExpr.h:394
↓ 79 callersFunctionesl_DCompare
Function: esl_{DF}Compare() * Synopsis: Compare floating point values for approximate equality, better version. * Incept: SRE, Thu 19 Jul 2018
ext/src/easel/easel.c:2334
↓ 79 callersFunctionkputs
ext/src/samtools/kstring.h:93
↓ 78 callersFunctionCharPtr
A helper that turns the type of a C-string literal from const char[N] to const char*.
ext/src/googletest/googlemock/test/gmock-more-actions_test.cc:250
↓ 78 callersFunctionisDefault
Compile time row arguments
ext/include/blaze/blaze/math/views/Row.h:1134
↓ 78 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatSchurExpr.h:222
↓ 78 callersMethodsize
@brief returns number of children */
ext/include/clipp/clipp.h:3410
↓ 77 callersMethodback
src/common/adt/kmer_vector.hpp:143
↓ 77 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatSchurExpr.h:231
↓ 77 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TDMatTSMatMultExpr.h:392
↓ 77 callersFunctionfind
ext/include/llvm/ADT/STLExtras.h:1493
↓ 76 callersFunction_mm_add_ps
Adds the four single-precision, floating-point values of a and b. r0 := a0 + b0 r1 := a1 + b1 r2 := a2 + b2 r3 := a3 + b3 https://msdn.microsoft.com
ext/include/sse2neon/sse2neon.h:1024
↓ 76 callersFunctioncount
ext/include/llvm/ADT/STLExtras.h:1549
↓ 76 callersFunctionisSingleWord
Determine if this APInt just has one word to store value. \returns true if the number of bits <= 64, false otherwise.
ext/include/llvm/ADT/APInt.h:114
↓ 76 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTSMatSchurExpr.h:384
↓ 76 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatDMatSchurExpr.h:384
↓ 76 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatDMatMultExpr.h:382
↓ 76 callersMethodstr
src/projects/ionhammer/HSeq.hpp:254
↓ 76 callersMethodtype
src/common/library/library.hpp:64
↓ 76 callersMethodupperBound
UpperBound function !\brief Returns an iterator to the first index greater then the given index. // // \param index The index of the search elem
ext/include/blaze/blaze/math/expressions/SVecMapExpr.h:403
↓ 75 callersFunctioncapacity
Storage order of the matrix
ext/include/blaze/blaze/math/expressions/Matrix.h:671
↓ 75 callersMethodend
ext/src/googletest/googletest/test/googletest-printers-test.cc:251
↓ 75 callersFunctionesl_sqio_Read
Function: esl_sqio_Read() * Synopsis: Read the next sequence from a file. * * Purpose: Reads the next sequence from open sequence file <sqfp> i
ext/src/easel/esl_sqio.c:355
↓ 74 callersFunctionContains
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:5096
↓ 74 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatDMatSchurExpr.h:394
↓ 74 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatSMatSchurExpr.h:394
↓ 74 callersMethodname
src/projects/online_vis/environment.hpp:39
↓ 74 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatSchurExpr.h:221
↓ 73 callersFunctionAtomMatchesChar
Returns true if and only if the given atom (specified by escaped and pattern) matches ch. The result is undefined if the atom is invalid.
ext/src/googletest/googletest/src/gtest-port.cc:781
↓ 73 callersFunctionValues
ext/src/googletest/googletest/include/gtest/gtest-param-test.h:336
↓ 73 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatSchurExpr.h:232
↓ 73 callersFunctiondeallocate
ext/include/blaze/blaze/util/Memory.h:230
↓ 73 callersMethodfront
src/common/adt/small_pod_vector.hpp:515
↓ 73 callersMethodget
ext/include/boost/core/addressof.hpp:66
↓ 73 callersFunctiongetNumWords
Get the number of words. Here one word's bitwidth equals to that of uint64_t. \returns the number of words to hold the integer value of this APInt.
ext/include/llvm/ADT/APInt.h:1573
↓ 73 callersMethodpush_back
src/common/assembly_graph/paths/mapping_path.hpp:280
↓ 72 callersFunctionLt
Creates a polymorphic matcher that matches a 2-tuple where the first field < the second field.
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:4868
↓ 72 callersMethodback
ext/src/lexy/include/lexy/_detail/string_view.hpp:85
↓ 72 callersMethodlength
src/common/hmm/hmmfile.cpp:65
↓ 72 callersMethodload
Result type
ext/include/blaze/blaze/math/dense/CustomMatrix.h:2325
↓ 72 callersMethodload
Type tag
ext/include/blaze/blaze/math/dense/DynamicMatrix.h:2482
↓ 72 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTDMatSchurExpr.h:248
↓ 72 callersMethodsize
src/projects/hammer/kmer_data.hpp:34
↓ 71 callersFunctionDescribeNegation
ext/src/googletest/googlemock/test/gmock-matchers_test.h:177
↓ 71 callersFunctionGt
Creates a polymorphic matcher that matches a 2-tuple where the first field > the second field.
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:4860
↓ 71 callersMethodadd
src/common/adt/hll.hpp:36
↓ 71 callersMethodend
src/common/assembly_graph/core/graph_core.hpp:361
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