Compile time submatrix arguments

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Type of the operand

Private data getter class member functions.

Value function !\brief Access to the current value of the sparse band element. // // \return The current value of the sparse band element.

wordify() * Converts log probability score to a rounded signed 16-bit integer cost. * Both emissions and transitions for ViterbiFilter get this trea

wordify() * Converts log probability score to a rounded signed 16-bit integer cost. * Both emissions and transitions for ViterbiFilter get this trea

wordify() * Converts log probability score to a rounded signed 16-bit integer cost. * Both emissions and transitions for ViterbiFilter get this trea

Creates a polymorphic matcher that matches any NULL pointer.

Returns true if and only if regex matches any substring of str. regex must be a valid simple regular expression, or the result is undefined. The alg

* DISCLAIMER: There are known *seed-dependent* multicollisions here due to * multiplication by zero, affecting hashes of lengths 17 to 240. * * How

Set packed double-precision (64-bit) floating-point elements in dst with the supplied values. https://software.intel.com/sites/landingpage/IntrinsicsG

Compile time row arguments

Equality comparison. Compares this APInt with RHS for the validity of the equality relationship. \returns true if *this == Val

Function: esl_alphabet_CreateCustom() * Synopsis: Create a custom alphabet. * * Purpose: Creates a customized biosequence alphabet, *

Function: esl_dst_XPairId() * Synopsis: Pairwise identity of two aligned digital seqs. * Incept: SRE, Tue Apr 18 09:24:05 2006 [St. Louis] *

Function: esl_exp_surv() * * Purpose: Calculates the survivor function, $P(X>x)$ (that is, 1-CDF, * the right tail probability mass)

Function: esl_keyhash_Lookup() * Synopsis: Look up a key's array index. * * Purpose: Look up string or mem <key> of length <n> in hash table <k

Function: esl_memstrdup() * Synopsis: Duplicate a memory line as a NUL-terminated string. * * Purpose: Given memory line <p> of length <n>, dup

Function: esl_rand64_Destroy() * Synopsis: Frees an <ESL_RAND64>. * Incept: SRE, Tue 21 Aug 2018 */

Function: esl_rand64_Roll() * Synopsis: Generate a uniform random integer 0..n-1. * Incept: SRE, Tue 21 Aug 2018 */

Function: esl_sqio_IsAlignment() * Synopsis: Return TRUE for alignment file format codes. * * Purpose: Returns TRUE if <fmt> is an alignment fi

Function: esl_sqio_Write() * Synopsis: Write a sequence to a file. * * Purpose: Write sequence <s> to an open FILE <fp> in file format *

Function: esl_workqueue_Reset() * Synopsis: Reset the queue for another run. * Incept: MSF, Thu Jun 18 11:51:39 2009 * * Purpose: Reset the

Lookup routines.

Type of the adapted matrix

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */

Free a block

Function: p7_omx_GrowTo() * Synopsis: Assure that a DP matrix is big enough. * Incept: SRE, Thu Dec 20 09:27:07 2007 [Janelia] * * Purpose:

Function: p7_tophits_Merge() * Synopsis: Merge two top hits lists. * * Purpose: Merge <h2> into <h1>. Upon return, <h1> * contains

Function: parse_string() * Synopsis: Parse a visible string * Incept: MSF, Mon Dec 10, 2009 [Janelia] * * Purpose: Parses a string from the

Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */

Exchange of the contents of `lhs` and `rhs`. \throws Nothing.

tell - Return the current offset with the file.

Gets the number of all test suites.

Asserts that condition is true; aborts the process with the given message if condition is false. We cannot use LOG(FATAL) or CHECK() as Google Mock m

* @brief Clears all indexes. */