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Functions40,422 in github.com/ablab/spades

↓ 18 callersFunction_mm_and_ps
Computes the bitwise AND of the four single-precision, floating-point values of a and b. r0 := a0 & b0 r1 := a1 & b1 r2 := a2 & b2 r3 := a3 & b3 htt
ext/include/sse2neon/sse2neon.h:1049
↓ 18 callersFunction_mm_castps_si128
Applies a type cast to reinterpret four 32-bit floating point values passed in as a 128-bit parameter as packed 32-bit integers. https://msdn.microsof
ext/include/sse2neon/sse2neon.h:3215
↓ 18 callersFunction_mm_set_epi32
Sets the 4 signed 32-bit integer values. https://msdn.microsoft.com/en-us/library/vstudio/019beekt(v=vs.100).aspx
ext/include/sse2neon/sse2neon.h:5100
↓ 18 callersFunctionall_of
ext/include/llvm/ADT/STLExtras.h:1473
↓ 18 callersFunctionb
(c)
src/tools/webvis/static/sigma.min.js:2
↓ 18 callersMethodbase
ext/include/llvm/Support/Memory.h:37
↓ 18 callersMethodbase
Base function !\brief Access to the current position of the submatrix iterator. // // \return The current position of the submatrix iterat
ext/include/blaze/blaze/math/views/submatrix/Sparse.h:2828
↓ 18 callersMethodbegin
Compile time band arguments
ext/include/blaze/blaze/math/views/band/Dense.h:870
↓ 18 callersMethodcanAlias
Data type of the foreign expression
ext/include/blaze/blaze/math/views/column/Dense.h:1369
↓ 18 callersMethodcanAlias
Data type of the foreign expression
ext/include/blaze/blaze/math/views/row/Dense.h:1369
↓ 18 callersMethodcapacity
ext/include/llvm/ADT/SmallVector.h:67
↓ 18 callersFunctioncode_point
ext/src/lexy/include/lexy/code_point.hpp:23
↓ 18 callersFunctioncomposition_compare
compare compositions before/after. * either mono (m1,m2) or di (d1,d2) may be NULL, to compare only the other one */
ext/src/easel/esl_randomseq.c:1527
↓ 18 callersFunctiondebug
ext/src/samtools/sam_header.c:54
↓ 18 callersMethodend
ext/include/llvm/Support/JSON.h:182
↓ 18 callersMethodend
Type tag
ext/include/blaze/blaze/math/dense/DynamicMatrix.h:1323
↓ 18 callersMethodend
Compile time column arguments
ext/include/blaze/blaze/math/views/column/Dense.h:655
↓ 18 callersFunctionesl_abc_CreateDsq
Function: esl_abc_CreateDsq() * Synopsis: Digitizes a sequence into new space. * * Purpose: Given an alphabet <a> and an ASCII sequence <seq>,
ext/src/easel/esl_alphabet.c:634
↓ 18 callersFunctionesl_dirichlet_FSampleUniform
Function: esl_dirichlet_FSampleUniform() * * Purpose: Same as <esl_dirichlet_DSampleUniform()>, except it * works in single-precision
ext/src/easel/esl_dirichlet.c:189
↓ 18 callersFunctionesl_fprintf
Function: esl_fprintf() * Synopsis: fprintf() wrapped in our exception handling * Incept: SRE, Thu Jun 14 09:43:59 2018 * * Purpose: <fpri
ext/src/easel/easel.c:884
↓ 18 callersFunctionesl_msa_Create
Function: esl_msa_Create() * Synopsis: Creates an <ESL_MSA> object. * * Purpose: Creates and initializes an <ESL_MSA> object, and returns a *
ext/src/easel/esl_msa.c:85
↓ 18 callersFunctionesl_scorematrix_Destroy
Function: esl_scorematrix_Destroy() * Synopsis: Frees a matrix. * * Purpose: Frees a score matrix. */
ext/src/easel/esl_scorematrix.c:389
↓ 18 callersFunctionesl_sq_Create
Function: esl_sq_Create() * Synopsis: Create a new, empty <ESL_SQ>. * Incept: SRE, Thu Dec 23 11:57:00 2004 [Zaragoza] * * Purpose: Creates
ext/src/easel/esl_sq.c:57
↓ 18 callersFunctionesl_vec_DCopy
Function: esl_vec_{DFILWB}Copy() * Synopsis: Set <dest> vector to same values as <src>. * * Purpose: Copies <src> to <dest>. <src> is *
ext/src/easel/esl_vectorops.c:488
↓ 18 callersMethodfind
ext/include/cuckoo/cuckoohash_map.hh:600
↓ 18 callersFunctionfind_format
ext/include/boost/algorithm/string/find_format.hpp:128
↓ 18 callersMethodget
src/common/paired_info/histptr.hpp:55
↓ 18 callersMethodget
Type of the unsigned value
ext/include/blaze/blaze/util/UnsignedValue.h:189
↓ 18 callersMethodgetAsInteger
ext/src/llvm/StringRef.cpp:514
↓ 18 callersMethodgetStart
src/common/auxiliary_graphs/scaffold_graph/scaffold_graph.hpp:84
↓ 18 callersFunctionhash_mix
ext/include/boost/container_hash/detail/hash_mix.hpp:105
↓ 18 callersFunctionhuman_readable_memory
src/common/utils/perf/perfcounter.hpp:52
↓ 18 callersMethodid
src/common/pipeline/stage.hpp:36
↓ 18 callersMethodidx
Alignment flag
ext/include/blaze/blaze/math/dense/UniformIterator.h:407
↓ 18 callersFunctionisSymmetric
Storage order
ext/include/blaze/blaze/math/Matrix.h:142
↓ 18 callersFunctionkstrtok
ext/src/samtools/kstring.c:27
↓ 18 callersMethodlinks
src/common/assembly_graph/core/graph.hpp:155
↓ 18 callersMethodnonZeros
Compile time column arguments
ext/include/blaze/blaze/math/views/column/Sparse.h:1309
↓ 18 callersMethodnonZeros
Compile time row arguments
ext/include/blaze/blaze/math/views/row/Sparse.h:1309
↓ 18 callersMethodopen
src/common/io/sam/bam_parser.cpp:39
↓ 18 callersMethodout_begin
src/common/assembly_graph/core/graph_core.hpp:450
↓ 18 callersFunctionp7_hit_Destroy
ext/src/hmmer/src/p7_hit.c:86
↓ 18 callersFunctionp7_hmm_DecodeStatetype
Function: p7_hmm_DecodeStatetype() * Synopsis: Convert an internal state type code to a string. * * Purpose: Returns the state type in text, as
ext/src/hmmer/src/p7_hmm.c:364
↓ 18 callersFunctionprintprob
printprob() * Print a probability (with a leading space), formatted * for an H2 ASCII save file. * * Returns: <eslOK> on success. * * Throws:
ext/src/hmmer/src/h2_io.c:234
↓ 18 callersMethodrbegin
ext/include/rdsl/devector.hpp:228
↓ 18 callersMethodreserve
Compile time column arguments
ext/include/blaze/blaze/math/views/column/Sparse.h:1347
↓ 18 callersFunctionresize
ext/include/boost/multi_index/sequenced_index.hpp:264
↓ 18 callersMethodsearch
src/common/modules/simplification/topological_edge_conditions.hpp:181
↓ 18 callersMethodshift
src/common/sequence/range.hpp:29
↓ 18 callersFunctionstandard_simplif_relevant_info
src/test/debruijn/simplification_test.cpp:112
↓ 18 callersMethodstr
src/common/alignment/pacbio/gap_dijkstra.hpp:77
↓ 18 callersMethodtoString
ext/src/llvm/APInt.cpp:2166
↓ 18 callersMethodudiv
ext/src/llvm/APInt.cpp:1599
↓ 18 callersFunctionwhichWord
Determine which word a bit is in. \returns the word position for the specified bit position.
ext/include/llvm/ADT/APInt.h:119
↓ 18 callersMethodwrite_line_break
(self, data=None)
ext/src/python_libs/pyyaml3/emitter.py:826
↓ 17 callersFunctionAlwaysFalse
Always returns false.
ext/src/googletest/googletest/include/gtest/internal/gtest-internal.h:815
↓ 17 callersFunctionByRef
ext/src/googletest/googlemock/include/gmock/gmock-actions.h:2084
↓ 17 callersMethodGet
ext/src/googletest/googletest/src/gtest-port.cc:281
↓ 17 callersMethodRun
src/common/alignment/pacbio/gap_filler.cpp:165
↓ 17 callersFunctionShuffleRange
ext/src/googletest/googletest/src/gtest-internal-inl.h:305
↓ 17 callersFunctionUnorderedElementsAreArray
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:4423
↓ 17 callersMethodVoidFromString
ext/src/googletest/googlemock/test/gmock_link_test.h:234
↓ 17 callersFunctionbam_header_read
ext/src/samtools/bam.c:81
↓ 17 callersFunctionbam_read1
ext/src/samtools/bam.c:191
↓ 17 callersMethodbitcastToAPInt
ext/src/llvm/APFloat.cpp:3289
↓ 17 callersFunctioncos
ext/include/blaze/blaze/math/proxy/Proxy.h:1785
↓ 17 callersFunctiond
(a,b)
src/tools/webvis/static/sigma.min.js:2
↓ 17 callersMethodend
src/common/adt/small_pod_vector.hpp:495
↓ 17 callersMethodend
Result type
ext/include/blaze/blaze/math/dense/CustomMatrix.h:1248
↓ 17 callersFunctionerr_fwrite
ext/src/bwa/utils.c:124
↓ 17 callersFunctionesl_FileExists
Function: esl_FileExists() * Synopsis: Return TRUE if <filename> exists and is readable, else FALSE. * * Purpose: Returns TRUE if <filename> ex
ext/src/easel/easel.c:1734
↓ 17 callersFunctionesl_abc_GuessAlphabet
Function: esl_abc_GuessAlphabet() * Synopsis: Guess alphabet type from residue composition. * * Purpose: Guess the alphabet type from a residue
ext/src/easel/esl_alphabet.c:1250
↓ 17 callersFunctionesl_fileparser_SetCommentChar
Function: esl_fileparser_SetCommentChar() * * Purpose: Defines a single character <c> for comments. Anything * on a line following th
ext/src/easel/esl_fileparser.c:168
↓ 17 callersFunctionesl_histogram_Add
Function: esl_histogram_Add() * Synopsis: Add a sample to the histogram. * * Purpose: Adds score <x> to a histogram <h>. * *
ext/src/easel/esl_histogram.c:235
↓ 17 callersFunctionesl_mem_strtoi64
Function: esl_mem_strtoi64() * Synopsis: Convert a chunk of memory to an int64_t. * Incept: SRE, Thu 02 Aug 2018 [Slaid Cleaves, Drunken Barber
ext/src/easel/esl_mem.c:173
↓ 17 callersFunctionesl_msafile_stockholm_Write
Function: esl_msafile_stockholm_Write() * Synopsis: Write a Stockholm format alignment to a stream. * * Purpose: Write alignment <msa> to outpu
ext/src/easel/esl_msafile_stockholm.c:354
↓ 17 callersFunctionesl_randomness_Init
Function: esl_randomness_Init() * Synopsis: Reinitialize a RNG. * * Purpose: Reset and reinitialize an existing <ESL_RANDOMNESS> *
ext/src/easel/esl_random.c:214
↓ 17 callersFunctionesl_rnd_DChoose
Function: esl_rnd_DChoose() * Synopsis: Return random choice from discrete multinomial distribution. * * Purpose: Make a random choic
ext/src/easel/esl_random.c:829
↓ 17 callersFunctionesl_sq_FetchFromMSA
Function: esl_sq_FetchFromMSA() * Synopsis: Fetch a single sequence from an MSA. * Incept: SRE, Sun Mar 30 13:39:06 2008 [Janelia] * * Purpos
ext/src/easel/esl_sq.c:1883
↓ 17 callersFunctionesl_vec_DMax
Function: esl_vec_{DFIL}Max() * Synopsis: Return value of the maximum element in a vector. * * Purpose: Returns the maximum value of
ext/src/easel/esl_vectorops.c:288
↓ 17 callersMethodformat
\rst Formats arguments and returns the result as a string. **Example**:: std::string message = format("The answer is {}", 42); \endrst */
ext/include/cppformat/format.h:2116
↓ 17 callersMethodget
src/common/assembly_graph/core/order_and_law.hpp:167
↓ 17 callersFunctiongetStorage
ext/include/llvm/Support/Error.h:625
↓ 17 callersMethodget_name
Get the node's name.
src/tools/webvis/pydot.py:787
↓ 17 callersFunctioninvoke
ext/src/lexy/include/lexy/_detail/invoke.hpp:56
↓ 17 callersMethodisSmall
ext/include/llvm/ADT/SmallBitVector.h:184
↓ 17 callersFunctionisUniLower
Compile time submatrix arguments
ext/include/blaze/blaze/math/views/Submatrix.h:3026
↓ 17 callersFunctionisUniUpper
Compile time submatrix arguments
ext/include/blaze/blaze/math/views/Submatrix.h:3168
↓ 17 callersMethodis_minimal
src/common/kmer_index/ph_map/key_with_hash.hpp:98
↓ 17 callersMethodkey
ext/include/parallel_hashmap/phmap_base.h:554
↓ 17 callersFunctionknet_seek
ext/src/samtools/knetfile.c:531
↓ 17 callersMethodleftOperand
Left operand access !\brief Returns the left-hand side dense matrix operand. // // \return The left-hand side dense matrix operand. */
ext/include/blaze/blaze/math/expressions/DMatDMatMultExpr.h:431
↓ 17 callersMethodleftOperand
Left operand access !\brief Returns the left-hand side transpose dense matrix operand. // // \return The left-hand side transpose dense matrix o
ext/include/blaze/blaze/math/expressions/TDMatTDMatMultExpr.h:429
↓ 17 callersMethodline_number
Return the current line number. May return any number at EOF.
ext/include/llvm/Support/LineIterator.h:55
↓ 17 callersMethodmapping_at
src/common/assembly_graph/paths/mapping_path.hpp:235
↓ 17 callersMethodname
ext/include/boost/core/typeinfo.hpp:79
↓ 17 callersMethodoff_by
ext/include/rdsl/devector.hpp:89
↓ 17 callersFunctionp7_ProfileEmit
Function: p7_ProfileEmit() * Synopsis: Sample a sequence from the search form of the model. * Incept: SRE, Mon Jan 22 10:23:28 2007 [Janelia]
ext/src/hmmer/src/emit.c:183
↓ 17 callersMethodparent
Getter for the parent of this node.
ext/include/parallel_hashmap/btree.h:1191
↓ 17 callersMethodpop_back
src/common/adt/small_pod_vector.hpp:542
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