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Functions474 in github.com/Yuan1z0825/nature-skills

↓ 1 callersFunctionoutput_path
(pdf: Path, source: Path, output: Path)
skills/nature-paper-to-patent/scripts/extract_pdf_text.py:33
↓ 1 callersFunctionpages
(item: dict[str, Any])
skills/nature-citation/scripts/nature_citation.py:488
↓ 1 callersFunctionpairwise_sqdist
(X: np.ndarray)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:12
↓ 1 callersFunctionparseArgs
(argv)
skills/nature-downloader/scripts/browser_pdf_downloader.mjs:24
↓ 1 callersFunctionparseArgs
(argv)
skills/nature-downloader/scripts/batch_download.mjs:47
↓ 1 callersFunctionparseArgs
(argv)
skills/nature-downloader/scripts/cdp_open_url.mjs:13
↓ 1 callersFunctionparse_args
(argv: list[str])
skills/nature-citation/scripts/nature_citation.py:1920
↓ 1 callersFunctionparse_medline_fields
Parse MEDLINE text into a dict of tag -> [values].
skills/nature-academic-search/scripts/converters.py:19
↓ 1 callersFunctionplot_angular_spread
(ax)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:328
↓ 1 callersFunctionplot_curve
(fig_name: str)
skills/nature-figure/assets/figures4papers/figure_ophthal_review/plot_trend.py:74
↓ 1 callersFunctionplot_curves
(data_posttraining)
skills/nature-figure/assets/figures4papers/figure_VIGIL/plot_posttraining.py:30
↓ 1 callersFunctionplot_decorrelation
(ax)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:110
↓ 1 callersFunctionplot_heatmap
(fig_name: str)
skills/nature-figure/assets/figures4papers/figure_ophthal_review/plot_composition.py:33
↓ 1 callersFunctionplot_l2_repel
(ax)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:259
↓ 1 callersFunctionplot_orthogonalization
(ax)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:204
↓ 1 callersFunctionplot_radar
Single radar chart. Each axis = one subtask; one curve per method. Each benchmark (task suffix after \\n) has its own radii list: values are
skills/nature-figure/assets/figures4papers/figure_VIGIL/plot_comparison_radar.py:39
↓ 1 callersFunctionprint_report
Print a human-readable pre-flight report.
skills/nature-academic-search/scripts/preflight.py:87
↓ 1 callersFunctionprocess_file
(input_file, output_dir, fmt, retries=1)
skills/nature-academic-search/scripts/format-converter.py:247
↓ 1 callersFunctionprocess_segment_batches
( segments: list[Segment], args: argparse.Namespace, outdir: Path, base_path: Path, )
skills/nature-citation/scripts/nature_citation.py:991
↓ 1 callersFunctionread_claims
(args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:842
↓ 1 callersFunctionread_dois
(args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:854
↓ 1 callersFunctionreferences
(body: str)
skills/nature-paper-to-patent/scripts/audit_claims.py:37
↓ 1 callersFunctionrel_link
(path: Path, outdir: Path)
skills/nature-citation/scripts/nature_citation.py:1180
↓ 1 callersFunctionrender
(figure: dict)
skills/nature-paper-to-patent/scripts/render_flowchart_svg.py:185
↓ 1 callersFunctionrender_png
(figure: dict, output: Path)
skills/nature-paper-to-patent/scripts/render_flowchart_svg.py:259
↓ 1 callersFunctionresolve_author
Resolve an author name to OpenAlex author ID(s). OpenAlex often splits one real person into several records, and common (e.g. romanised Chine
skills/nature-academic-search/scripts/academic_search.py:126
↓ 1 callersFunctionresolve_batch_size
(segment_count: int, args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:356
↓ 1 callersFunctionresolve_by_orcid
Resolve an ORCID (bare 0000-... or full URL) to its OpenAlex author ID(s).
skills/nature-academic-search/scripts/academic_search.py:181
↓ 1 callersFunctionreverseMapStatus
(s)
skills/nature-downloader/scripts/batch_download.mjs:383
↓ 1 callersFunctionsafe_scale
(V, s=0.6, eps=EPSILON)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:17
↓ 1 callersFunctionschoolSummary
(config)
skills/nature-downloader/scripts/lib/school-config.mjs:31
↓ 1 callersFunctionscroll
(proxy, target, direction = "bottom")
skills/nature-downloader/scripts/lib/cdp-utils.mjs:162
↓ 1 callersFunctionsearch
(query: str | None = None, limit: int = 10, year_from: int | None = None, sort: str = "relevance_sc
skills/nature-academic-search/scripts/academic_search.py:210
↓ 1 callersMethodsearch_affiliations
Search Scopus affiliations and return only the requested first page.
skills/nature-academic-search/mcp-server/sources/scopus.py:173
↓ 1 callersMethodsearch_authors
Search Scopus author profiles and return only the requested first page.
skills/nature-academic-search/mcp-server/sources/scopus.py:112
↓ 1 callersFunctionsearch_segment
(segment: Segment, args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:890
↓ 1 callersMethodsearch_serial_titles
Search Scopus serial titles and return only the requested first page.
skills/nature-academic-search/mcp-server/sources/scopus.py:237
↓ 1 callersFunctionsegment_text
(text: str, max_chars: int = 700)
skills/nature-citation/scripts/nature_citation.py:564
↓ 1 callersFunctionself_test
Run self-check on format converter pipeline.
skills/nature-academic-search/scripts/format-converter.py:297
↓ 1 callersFunctionsleep
(ms)
skills/nature-downloader/scripts/lib/cdp-utils.mjs:21
↓ 1 callersFunctionslug_from_text
Derive a filename slug from the first meaningful words of manuscript text.
skills/nature-citation/scripts/nature_citation.py:313
↓ 1 callersFunctionsplit_author_parts
(name: str)
skills/nature-citation/scripts/nature_citation.py:384
↓ 1 callersFunctionsplit_claims
(text: str)
skills/nature-paper-to-patent/scripts/audit_claims.py:28
↓ 1 callersFunctionsplit_sentences
(text: str)
skills/nature-citation/scripts/nature_citation.py:508
↓ 1 callersFunctiontable
(headers, rows)
skills/nature-proposal-writer/scripts/build_proposal_docx.py:87
↓ 1 callersFunctionusage
()
skills/nature-downloader/scripts/browser_pdf_downloader.mjs:15
↓ 1 callersFunctionusage
()
skills/nature-downloader/scripts/cdp_open_url.mjs:4
↓ 1 callersFunctionvalidate
(data: dict)
skills/nature-paper-to-patent/scripts/build_patent_package.py:17
↓ 1 callersFunctionvalidate
(data: dict)
skills/nature-paper-to-patent/scripts/validate_patent_draft.py:34
↓ 1 callersFunctionvalidate
(data: dict)
skills/nature-paper-to-patent/scripts/render_patent_docx.py:239
↓ 1 callersFunctionvalidate_ezproxy_url
校验 EZproxy 地址:HTTP GET 探测登录表单。 判断标准:页面含 password 输入框。
skills/nature-downloader/src/validators.py:104
↓ 1 callersFunctionvalidate_figure
( figure: dict, steps_by_claim: dict[int, set[str]], descriptions: list[str], )
skills/nature-paper-to-patent/scripts/render_flowchart_svg.py:30
↓ 1 callersFunctionvalidate_libraries
校验数据库清单。
skills/nature-downloader/src/validators.py:152
↓ 1 callersFunctionvalidate_school_name
校验学校名称基本格式。
skills/nature-downloader/src/validators.py:142
↓ 1 callersFunctionwosRecordUrls
(proxy, topic, count, debug, discoveryUrl = WOS)
skills/nature-downloader/scripts/batch_download.mjs:90
↓ 1 callersFunctionwrite_export_checkpoint
( outdir: Path, base_path: Path, export_format: str, references: list[Candidate], )
skills/nature-citation/scripts/nature_citation.py:951
↓ 1 callersFunctionwrite_final_artifacts
( mapping: list[dict[str, Any]], references: list[Candidate], outdir: Path, output_path: Path,
skills/nature-citation/scripts/nature_citation.py:967
↓ 1 callersFunctionwrite_html
( mapping: list[dict[str, Any]], references: list[Candidate], outdir: Path, path: Path, ex
skills/nature-citation/scripts/nature_citation.py:1187
↓ 1 callersFunctionwrite_mapping_tsv
(mapping: list[dict[str, Any]], path: Path)
skills/nature-citation/scripts/nature_citation.py:1067
↓ 1 callersFunctionwrite_report
( mapping: list[dict[str, Any]], path: Path, scope: str, reference_count: int, export_form
skills/nature-citation/scripts/nature_citation.py:1126
↓ 1 callersFunctiony1_from_item
(item: dict[str, Any])
skills/nature-citation/scripts/nature_citation.py:470
↓ 1 callersFunctionyear_from_item
(item: dict[str, Any])
skills/nature-citation/scripts/nature_citation.py:465
↓ 1 callersFunctionzotero_date_value
(item: Candidate)
skills/nature-citation/scripts/nature_citation.py:378
Method__init__
(self, config_path: str | Path | None = None)
skills/nature-academic-search/mcp-server/utils/config.py:10
Method__init__
(self, source: str, message: str, original_error: Exception | None = None)
skills/nature-academic-search/mcp-server/utils/errors.py:11
Method__init__
(self)
skills/nature-academic-search/mcp-server/sources/crossref.py:18
Method__init__
(self)
skills/nature-academic-search/mcp-server/sources/arxiv.py:30
Method__init__
(self, xs, ys, zs, *args, **kwargs)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:100
Methodarticle_resource
(self)
skills/nature-citation/scripts/nature_citation.py:228
Methodarxiv_timeout
(self)
skills/nature-academic-search/mcp-server/utils/config.py:32
Methodas_dict
(self)
skills/nature-citation/scripts/nature_citation.py:241
Methodcitation_marker
(self)
skills/nature-citation/scripts/nature_citation.py:212
Functionclone_omml
(element)
skills/nature-paper-to-patent/scripts/math_to_omml.py:155
Functioncmd_health
(args: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:65
Functioncmd_infer
(args: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:50
Functioncmd_list
(_: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:71
Functioncmd_preset
(args: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:22
Functioncmd_show
(_: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:55
Functioncmd_url
(args: argparse.Namespace)
skills/nature-downloader/scripts/configure_school.py:29
Methodcrossref_mailto
(self)
skills/nature-academic-search/mcp-server/utils/config.py:24
Methodcrossref_timeout
(self)
skills/nature-academic-search/mcp-server/utils/config.py:28
Methoddefault_rows
(self)
skills/nature-academic-search/mcp-server/utils/config.py:36
Methoddo_3d_projection
(self, renderer=None)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:104
Methoddoi_url
(self)
skills/nature-citation/scripts/nature_citation.py:196
Functionfake_search_all
(query, sources, rows, filter_type)
skills/nature-academic-search/mcp-server/tests/test_mcp_tools.py:21
Methodfirst_author
(self)
skills/nature-citation/scripts/nature_citation.py:206
Functionget_auth_info
快捷获取认证信息。未配置返回 None。
skills/nature-downloader/src/config.py:150
Functionget_citation
Get formatted citation for a paper. Uses CrossRef content negotiation for DOI-based citations. For PMID/arXiv IDs, fetches metadata first the
skills/nature-academic-search/mcp-server/academic_search_server.py:502
Functionget_paper_by_id
Get paper details by identifier (DOI, PMID, or arXiv ID). Args: id: Paper identifier. Auto-detected if id_type is "auto": - S
skills/nature-academic-search/mcp-server/academic_search_server.py:455
Functionget_school_name
快捷获取学校名称。未配置返回 None。
skills/nature-downloader/src/config.py:142
Functionget_sciencedirect_article_metadata
Retrieve ScienceDirect article metadata with a metadata API query.
skills/nature-academic-search/mcp-server/academic_search_server.py:437
Functionget_scopus_abstract
Retrieve Scopus abstract metadata. Args: identifier: EID, Scopus ID, DOI, PMID, or PII. id_type: Optional pybliometrics ID type;
skills/nature-academic-search/mcp-server/academic_search_server.py:240
Functionget_scopus_affiliation
Retrieve a Scopus affiliation by affiliation ID.
skills/nature-academic-search/mcp-server/academic_search_server.py:333
Functionget_scopus_author
Retrieve a Scopus author profile by author ID.
skills/nature-academic-search/mcp-server/academic_search_server.py:307
Functionget_scopus_citation_overview
Retrieve Scopus citation overview for one or more documents. Args: identifiers: Document identifiers. id_type: Identifier type, e
skills/nature-academic-search/mcp-server/academic_search_server.py:263
Functionget_scopus_plumx_metrics
Retrieve PlumX metrics for a document identifier.
skills/nature-academic-search/mcp-server/academic_search_server.py:407
Functionget_scopus_serial_title
Retrieve a Scopus serial title by ISSN.
skills/nature-academic-search/mcp-server/academic_search_server.py:390
Methodhandle
根据当前状态调度到对应处理函数。
skills/nature-downloader/src/wizard.py:465
Methodhandle_step2
处理 CARSI 选择。
skills/nature-downloader/src/wizard.py:216
Methodhandle_step2b
处理 CARSI 入口 URL 输入。
skills/nature-downloader/src/wizard.py:258
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