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Functions474 in github.com/Yuan1z0825/nature-skills

⨍ Functions 474◇ Types & classes 24↳ Endpoints 16
↓ 1 callersFunctionadd_abstract_figure
( document: Document, data: dict, figure_dir: Path | None, )
skills/nature-paper-to-patent/scripts/render_patent_docx.py:185
↓ 1 callersFunctionadd_equation
(document: Document, equation: dict)
skills/nature-paper-to-patent/scripts/render_patent_docx.py:41
↓ 1 callersFunctionadd_page_number
(section)
skills/nature-paper-to-patent/scripts/render_patent_docx.py:59
↓ 1 callersFunctionadd_review_appendix
(document: Document, data: dict)
skills/nature-paper-to-patent/scripts/render_patent_docx.py:196
↓ 1 callersFunctionarxiv_to_bib
Convert arXiv API Atom XML response to BibTeX format.
skills/nature-academic-search/scripts/converters.py:354
↓ 1 callersFunctionarxiv_to_enw
(root)
skills/nature-academic-search/scripts/converters.py:507
↓ 1 callersFunctionarxiv_to_ris
Convert arXiv API Atom XML response (xml.etree root) to RIS format.
skills/nature-academic-search/scripts/converters.py:299
↓ 1 callersFunctionaudit
(text: str)
skills/nature-paper-to-patent/scripts/audit_claims.py:53
↓ 1 callersFunctionauthor_name
(author: dict[str, Any])
skills/nature-citation/scripts/nature_citation.py:480
↓ 1 callersFunctionbackup_config
备份当前配置文件，返回备份路径。文件不存在返回 None。
skills/nature-downloader/src/config.py:123
↓ 1 callersFunctionbuild_journal_resource
(item: Candidate)
skills/nature-citation/scripts/nature_citation.py:396
↓ 1 callersFunctionbuild_mapping
(segments: list[Segment], args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:923
↓ 1 callersFunctionbuild_parser
()
skills/nature-downloader/scripts/configure_school.py:77
↓ 1 callersFunctionbuild_segments
(args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:872
↓ 1 callersFunctionbuild_zotero_citation_key
(item: Candidate)
skills/nature-citation/scripts/nature_citation.py:411
↓ 1 callersFunctionbuild_zotero_rdf_document
(candidates: list[Candidate])
skills/nature-citation/scripts/nature_citation.py:813
↓ 1 callersFunctionbullet
(text, level=0)
skills/nature-proposal-writer/scripts/build_proposal_docx.py:69
↓ 1 callersFunctioncheck_single
Check a single endpoint. Returns (ok, elapsed, error_message_or_None).
skills/nature-academic-search/scripts/preflight.py:41
↓ 1 callersFunctionchunk_segments
(segments: list[Segment], batch_size: int)
skills/nature-citation/scripts/nature_citation.py:364
↓ 1 callersFunctionclaim_step_map
(claims: list[dict])
skills/nature-paper-to-patent/scripts/render_flowchart_svg.py:22
↓ 1 callersFunctionclear_cache
清除自检缓存（配置变更后调用）。
skills/nature-downloader/src/health_check.py:143
↓ 1 callersFunctionclick
(proxy, target, selector, timeoutMs = 30000)
skills/nature-downloader/scripts/lib/cdp-utils.mjs:150
↓ 1 callersFunctioncollect_pdfs
(source: Path)
skills/nature-paper-to-patent/scripts/extract_pdf_text.py:23
↓ 1 callersFunctioncompute_diffusion_matrix
(x, z, t, sigma=1.0)
skills/nature-figure/assets/figures4papers/figure_Cflows/diffusion_swiss_roll.py:18
↓ 1 callersFunctionconfig_exists
配置文件是否存在。
skills/nature-downloader/src/config.py:35
↓ 1 callersFunctionconfigure
(document: Document)
skills/nature-paper-to-patent/scripts/render_patent_docx.py:73
↓ 1 callersMethodconfigure_from_resource_url
Configure from a library resource portal or authentication URL.
skills/nature-downloader/src/wizard.py:521
↓ 1 callersFunctionconfigure_utf8_stdio
Keep Chinese paths/text printable in Windows PowerShell and Claude Code terminals.
skills/nature-downloader/scripts/extract_pdf_text.py:8
↓ 1 callersFunctionconvert_from_arxiv
Convert arXiv Atom XML to RIS, BibTeX, or ENW.
skills/nature-academic-search/scripts/converters.py:581
↓ 1 callersFunctioncrossref_to_bib
Convert CrossRef API JSON response to BibTeX format.
skills/nature-academic-search/scripts/converters.py:240
↓ 1 callersFunctioncrossref_to_enw
(data)
skills/nature-academic-search/scripts/converters.py:456
↓ 1 callersFunctioncrossref_to_ris
Convert CrossRef API JSON response to RIS format.
skills/nature-academic-search/scripts/converters.py:179
↓ 1 callersFunctiondecode_ablation
(data_dict)
skills/nature-figure/assets/figures4papers/figure_ImmunoStruct/plot_bars.py:7
↓ 1 callersFunctiondelete_config
删除配置文件（用于重新配置）。返回是否删除成功。
skills/nature-downloader/src/config.py:133
↓ 1 callersFunctiondoiFromRecord
(proxy, target, recordUrl)
skills/nature-downloader/scripts/batch_download.mjs:137
↓ 1 callersFunctiondownloadDoi
(proxy, doi, outDir, wantSi, debug)
skills/nature-downloader/scripts/batch_download.mjs:150
↓ 1 callersFunctiondownloadSi
(proxy, tab, landingUrl, doi, outDir)
skills/nature-downloader/scripts/batch_download.mjs:243
↓ 1 callersFunctiondownload_arxiv
Download citation by arXiv ID. Returns (success, filename_or_error).
skills/nature-academic-search/scripts/format-converter.py:161
↓ 1 callersFunctiondownload_crossref
Download citation by DOI from CrossRef. Returns (success, filename_or_error).
skills/nature-academic-search/scripts/format-converter.py:123
↓ 1 callersFunctionesearch
(query, max_results=5)
skills/nature-academic-search/scripts/format-converter.py:50
↓ 1 callersFunctionexport_filename
(export_format: str, base: str = "references")
skills/nature-citation/scripts/nature_citation.py:305
↓ 1 callersFunctionextract
(source: Path, destination: Path)
skills/nature-paper-to-patent/scripts/extract_pdf_text.py:10
↓ 1 callersFunctionextract_with_pdfplumber
(pdf_path, max_pages)
skills/nature-downloader/scripts/extract_pdf_text.py:19
↓ 1 callersFunctionextract_with_pypdf
(pdf_path, max_pages)
skills/nature-downloader/scripts/extract_pdf_text.py:32
↓ 1 callersFunctionfallback_queries_from_segment
(text: str)
skills/nature-citation/scripts/nature_citation.py:537
↓ 1 callersFunctionfetchAnyToFile
(proxy, target, url, outPath, { onProgress, maxBytes } = {})
skills/nature-downloader/scripts/lib/pdf-utils.mjs:138
↓ 1 callersFunctionfetch_crossref
(query: str, rows: int, mailto: str | None = None, from_year: int | None = None, to_year: int | None = None, r
skills/nature-citation/scripts/nature_citation.py:629
↓ 1 callersFunctionfetch_crossref_doi
(doi: str, mailto: str | None = None)
skills/nature-citation/scripts/nature_citation.py:660
↓ 1 callersFunctionfetch_doi_candidates
(dois: list[str], args: argparse.Namespace)
skills/nature-citation/scripts/nature_citation.py:1022
↓ 1 callersFunctionformat_report
(findings: list[Finding])
skills/nature-paper-to-patent/scripts/validate_patent_draft.py:280
↓ 1 callersFunctionfunction
(x, y)
skills/nature-figure/assets/figures4papers/figure_RNAGenScape/plot_manifold.py:6
↓ 1 callersFunctionfunction
(x, y)
skills/nature-figure/assets/figures4papers/figure_RNAGenScape/plot_hole_manifold.py:6
↓ 1 callersFunctiongenerate_swiss_roll_2d
(n_samples=80, noise=0.1)
skills/nature-figure/assets/figures4papers/figure_Cflows/diffusion_swiss_roll.py:6
↓ 1 callersMethodget_abstract
Retrieve Scopus abstract metadata by EID, Scopus ID, DOI, PMID, or PII.
skills/nature-academic-search/mcp-server/sources/scopus.py:65
↓ 1 callersMethodget_affiliation
Retrieve a Scopus affiliation profile.
skills/nature-academic-search/mcp-server/sources/scopus.py:199
↓ 1 callersMethodget_author
Retrieve a Scopus author profile.
skills/nature-academic-search/mcp-server/sources/scopus.py:138
↓ 1 callersMethodget_citation_overview
Retrieve Scopus citation overview for one or more documents.
skills/nature-academic-search/mcp-server/sources/scopus.py:87
↓ 1 callersMethodget_plumx_metrics
Retrieve PlumX metrics for a document.
skills/nature-academic-search/mcp-server/sources/scopus.py:302
↓ 1 callersMethodget_serial_title
Retrieve a Scopus serial title by ISSN.
skills/nature-academic-search/mcp-server/sources/scopus.py:266
↓ 1 callersFunctionhandleWosAuthPreference
(proxy, target)
skills/nature-downloader/scripts/batch_download.mjs:71
↓ 1 callersMethodhandle_step1
处理资源入口链接；非 URL 输入按旧的学校名预设兜底。
skills/nature-downloader/src/wizard.py:122
↓ 1 callersMethodhandle_step7
处理最终保存确认。
skills/nature-downloader/src/wizard.py:437
↓ 1 callersFunctionin_scope
(journal: str, scope: str)
skills/nature-citation/scripts/nature_citation.py:432
↓ 1 callersFunctioninfer_export_format
(output_path: Path | None)
skills/nature-citation/scripts/nature_citation.py:292
↓ 1 callersFunctioninteractive_mode
(output_dir, fmt, retries=1)
skills/nature-academic-search/scripts/format-converter.py:270
↓ 1 callersFunctionis_dark
(color_in_hex, threshold=128)
skills/nature-figure/assets/figures4papers/figure_CellSpliceNet/plot_ablation.py:19
↓ 1 callersFunctionis_dark
(color_in_hex, threshold=128)
skills/nature-figure/assets/figures4papers/figure_CellSpliceNet/plot_comparison.py:53
↓ 1 callersFunctionlatex_to_omml
(latex: str)
skills/nature-paper-to-patent/scripts/math_to_omml.py:139
↓ 1 callersFunctionlimit_segments
(segments: list[Segment], max_segments: int)
skills/nature-citation/scripts/nature_citation.py:372
↓ 1 callersFunctionlistTargets
(proxy)
skills/nature-downloader/scripts/lib/cdp-utils.mjs:142
↓ 1 callersFunctionlist_school_names
返回所有预设学校名称列表。
skills/nature-downloader/src/schools_loader.py:118
↓ 1 callersFunctionload_freq_prior_data
(data_dir)
skills/nature-figure/assets/figures4papers/figure_FPGM/plot_freq_prior.py:7
↓ 1 callersFunctionload_schema
加载 JSON Schema。
skills/nature-downloader/src/config.py:29
↓ 1 callersFunctionlooks_like_heading
(text: str)
skills/nature-citation/scripts/nature_citation.py:516
↓ 1 callersMethodlookup_mesh
Look up a MeSH descriptor by term. Queries the MeSH database via E-utilities to find matching descriptor names and unique IDs.
skills/nature-academic-search/mcp-server/sources/pubmed.py:276
↓ 1 callersFunctionmain
()
skills/nature-academic-search/scripts/preflight.py:114
↓ 1 callersFunctionmain
()
skills/nature-academic-search/scripts/format-converter.py:354
↓ 1 callersFunctionmain
()
skills/nature-academic-search/scripts/academic_search.py:304
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/audit_claims.py:131
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/render_flowchart_svg.py:333
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/extract_pdf_text.py:42
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/init_patent_project.py:22
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/build_patent_package.py:71
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/validate_patent_draft.py:290
↓ 1 callersFunctionmain
()
skills/nature-paper-to-patent/scripts/render_patent_docx.py:249
↓ 1 callersFunctionmain
(argv: list[str])
skills/nature-citation/scripts/nature_citation.py:1948
↓ 1 callersFunctionmain
(argv: list[str] | None = None)
skills/nature-downloader/scripts/configure_school.py:106
↓ 1 callersFunctionmain
()
skills/nature-downloader/scripts/browser_pdf_downloader.mjs:56
↓ 1 callersFunctionmain
()
skills/nature-downloader/scripts/extract_pdf_text.py:45
↓ 1 callersFunctionmain
()
skills/nature-downloader/scripts/batch_download.mjs:272
↓ 1 callersFunctionmain
()
skills/nature-downloader/scripts/cdp_open_url.mjs:29
↓ 1 callersFunctionmake_partial_path
(path: Path)
skills/nature-citation/scripts/nature_citation.py:336
↓ 1 callersFunctionmapping_to_json
(mapping: list[dict[str, Any]], references: list[Candidate], args: argparse.Namespace, errors: list[dict[str,
skills/nature-citation/scripts/nature_citation.py:1042
↓ 1 callersFunctionmedline_to_bib
(fields)
skills/nature-academic-search/scripts/converters.py:128
↓ 1 callersFunctionmedline_to_enw
(fields)
skills/nature-academic-search/scripts/converters.py:412
↓ 1 callersFunctionmedline_to_ris
(fields)
skills/nature-academic-search/scripts/converters.py:68
↓ 1 callersFunctionnice_axes
(ax, L)
skills/nature-figure/assets/figures4papers/figure_Dispersion/plot_illustration.py:21
↓ 1 callersFunctionnormalize
(text: str)
skills/nature-paper-to-patent/scripts/audit_claims.py:49
↓ 1 callersFunctionnormalize_export_format
(value: str | None)
skills/nature-citation/scripts/nature_citation.py:284
↓ 1 callersFunctionnumbered
(text)
skills/nature-proposal-writer/scripts/build_proposal_docx.py:78
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