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Types & classes43 in github.com/THUNLP-MT/MEAN

⨍ Functions 429◇ Types & classes 43
↓ 6 callersClassAAComplex
data/pdb_utils.py:411
↓ 5 callersClassEquiAACDataset
data/dataset.py:25
↓ 5 callersClassPeptide
data/pdb_utils.py:244
↓ 3 callersClassAccept
A class to select which positions should be compared.
data/ImmunoPDB.py:1131
↓ 2 callersClassMCAttEGNN
models/MCAttGNN/mc_egnn.py:242
↓ 2 callersClassMC_E_GCL
Multi-Channel E(n) Equivariant Convolutional Layer
models/MCAttGNN/mc_egnn.py:18
↓ 2 callersClassPDBNumber
This will annotate residues in the structure with numbering schemes The original structure object remains unchanged. Annotations are list
data/ImmunoPDB.py:99
↓ 2 callersClassTrainConfig
trainer/abs_trainer.py:16
↓ 2 callersClassTrainer
trainer/abs_trainer.py:32
↓ 1 callersClassAminoAcid
data/pdb_utils.py:48
↓ 1 callersClassAminoAcidVocab
data/pdb_utils.py:67
↓ 1 callersClassAntibodyPDBParser
data/ImmunoPDB.py:339
↓ 1 callersClassComplexEncoder
evaluation/ddg/models/predictor.py:11
↓ 1 callersClassDDGPredictor
evaluation/ddg/models/predictor.py:95
↓ 1 callersClassDDGReadout
evaluation/ddg/models/predictor.py:61
↓ 1 callersClassEfficientMCAttModel
models/MCAttGNN/mc_att_model.py:336
↓ 1 callersClassGAEncoder
evaluation/ddg/models/attention.py:239
↓ 1 callersClassGeometricAttention
evaluation/ddg/models/attention.py:38
↓ 1 callersClassHMMscanError
data/anarci/anarci.py:85
↓ 1 callersClassITAWrapper
data/dataset.py:258
↓ 1 callersClassKnnResidue
evaluation/ddg/utils/data.py:95
↓ 1 callersClassMC_Att_L
Multi-Channel Attention Layer
models/MCAttGNN/mc_egnn.py:143
↓ 1 callersClassPaddingCollate
evaluation/ddg/utils/data.py:8
↓ 1 callersClassPerResidueEncoder
evaluation/ddg/models/residue.py:7
↓ 1 callersClassPositionalEncoding
evaluation/ddg/models/common.py:25
↓ 1 callersClassProteinFeature
models/MCAttGNN/mc_att_model.py:28
↓ 1 callersClassResidue
data/pdb_utils.py:159
↓ 1 callersClassSelectFv
data/ImmunoPDB.py:345
↓ 1 callersClassSelectFvScFv
data/ImmunoPDB.py:352
↓ 1 callersClassTcrPDBParser
data/ImmunoPDB.py:333
ClassAntigenReceptorPDBParser
A generic class to parse antigen receptor structures.
data/ImmunoPDB.py:210
ClassBlackHole
evaluation/ddg/utils/misc.py:7
ClassMCAttModel
models/MCAttGNN/mc_att_model.py:141
ClassMCAttTrainer
trainer/mcatt_trainer.py:8
ClassProtein
data/pdb_utils.py:311
Classbasic_ipstream
evaluation/TMscore.cpp:543
Classbasic_opstream
evaluation/TMscore.cpp:703
Classbasic_pstream
evaluation/TMscore.cpp:843
Classbasic_pstreambuf
evaluation/TMscore.cpp:296
Classbasic_rpstream
evaluation/TMscore.cpp:1013
Enumbuf_read_src
evaluation/TMscore.cpp:409
Classpstream_common
evaluation/TMscore.cpp:472
Classpstreams
Common base class providing constants and typenames.
evaluation/TMscore.cpp:271