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github.com/SuperSupermoon/MedViLL
/ types & classes
Types & classes
96 in github.com/SuperSupermoon/MedViLL
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Functions
425
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Types & classes
96
↓ 7 callers
Class
BertModel
BERT model ("Bidirectional Embedding Representations from a Transformer"). Params: config: a BertConfig class instance with the configura
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:759
↓ 4 callers
Class
BertLayerNorm
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:216
↓ 3 callers
Class
CNN_BERT_Dataset
downstream_task/report_generation_and_vqa/cnn_bert.py:37
↓ 3 callers
Class
CXRDataset
data/dataset_origin.py:31
↓ 3 callers
Class
CXR_Retrieval_Dataset
downstream_task/retrieval/retrieval.py:57
↓ 2 callers
Class
BertAdam
Implements BERT version of Adam algorithm with weight decay fix. Params: lr: learning rate warmup: portion of t_total for the w
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/optimization.py:58
↓ 2 callers
Class
BertModelIncr
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:848
↓ 2 callers
Class
BertPreTrainingHeads
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:508
↓ 2 callers
Class
CNN_BERT
downstream_task/report_generation_and_vqa/cnn_bert.py:175
↓ 2 callers
Class
CXRBertEncoder
downstream_task/retrieval/cxrbert_origin.py:31
↓ 2 callers
Class
CXR_VQA_Dataset
downstream_task/report_generation_and_vqa/vqa.py:64
↓ 2 callers
Class
ImageBertEmbeddings
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:873
↓ 2 callers
Class
ImageEncoder
downstream_task/classification/models/image.py:16
↓ 2 callers
Class
JsonlDataset
downstream_task/classification/data/dataset.py:12
↓ 2 callers
Class
SmoothedValue
Track a series of values and provide access to smoothed values over a window or the global series average.
utils/utils.py:75
↓ 2 callers
Class
SmoothedValue
Track a series of values and provide access to smoothed values over a window or the global series average.
downstream_task/report_generation_and_vqa/utils.py:177
↓ 2 callers
Class
pixel_full_sampling
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:36
↓ 2 callers
Class
pixel_random_sample
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:65
↓ 1 callers
Class
BasicTokenizer
Runs basic tokenization (punctuation splitting, lower casing, etc.).
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:181
↓ 1 callers
Class
BertAttention
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:346
↓ 1 callers
Class
BertConfig
Configuration class to store the configuration of a `BertModel`.
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:115
↓ 1 callers
Class
BertEmbeddings
Construct the embeddings from word, position and token_type embeddings.
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:232
↓ 1 callers
Class
BertEncoder
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:401
↓ 1 callers
Class
BertIntermediate
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:359
↓ 1 callers
Class
BertLMPredictionHead
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:462
↓ 1 callers
Class
BertLMPredictionHead
downstream_task/retrieval/cxrbert_origin.py:169
↓ 1 callers
Class
BertLMPredictionHead
models/MedViLL_origin.py:170
↓ 1 callers
Class
BertLayer
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:386
↓ 1 callers
Class
BertLayerNorm
downstream_task/retrieval/cxrbert_origin.py:137
↓ 1 callers
Class
BertLayerNorm
models/MedViLL_origin.py:138
↓ 1 callers
Class
BertOutput
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:372
↓ 1 callers
Class
BertPooler
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:431
↓ 1 callers
Class
BertPreTrainingHeads
downstream_task/retrieval/cxrbert_origin.py:188
↓ 1 callers
Class
BertPreTrainingHeads
models/MedViLL_origin.py:189
↓ 1 callers
Class
BertPredictionHeadTransform
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:444
↓ 1 callers
Class
BertPredictionHeadTransform
downstream_task/retrieval/cxrbert_origin.py:153
↓ 1 callers
Class
BertPredictionHeadTransform
models/MedViLL_origin.py:154
↓ 1 callers
Class
BertSelfAttention
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:270
↓ 1 callers
Class
BertSelfOutput
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:332
↓ 1 callers
Class
BpeOnlineTokenizer
Apply bpe tokenization to str line
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:547
↓ 1 callers
Class
CXRBERT
Multimodal BERT : Masked Language Model + Image Text Matching
downstream_task/retrieval/cxrbert_origin.py:82
↓ 1 callers
Class
CXRBertDecoder
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:1062
↓ 1 callers
Class
CXRBertForRetrieval
downstream_task/retrieval/model.py:11
↓ 1 callers
Class
IMG_Encoder
downstream_task/report_generation_and_vqa/cnn_bert.py:113
↓ 1 callers
Class
IMG_Encoder
CNN_BERT/main_cnn_bert.py:92
↓ 1 callers
Class
ImageBertEmbeddings
downstream_task/classification/models/model.py:6
↓ 1 callers
Class
ImageBertEmbeddings
downstream_task/retrieval/cxrbert_origin.py:7
↓ 1 callers
Class
ImageBertEmbeddings
models/MedViLL_origin.py:7
↓ 1 callers
Class
ImageEncoder_cnn
downstream_task/retrieval/image.py:33
↓ 1 callers
Class
ImageEncoder_cnn
models/image.py:34
↓ 1 callers
Class
ImageTextMatching
2-class classification model : Aligned, Not aligned
downstream_task/retrieval/cxrbert_origin.py:113
↓ 1 callers
Class
ImageTextMatching
2-class classification model : Aligned, Not aligned
models/MedViLL_origin.py:114
↓ 1 callers
Class
Img_patch_embedding
downstream_task/retrieval/image.py:73
↓ 1 callers
Class
Img_patch_embedding
models/image.py:75
↓ 1 callers
Class
LabelSmoothingLoss
With label smoothing, KL-divergence between q_{smoothed ground truth prob.}(w) and p_{prob. computed by model}(w) is minimized.
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/loss.py:12
↓ 1 callers
Class
LogFormatter
utils/logger.py:9
↓ 1 callers
Class
LogFormatter
downstream_task/classification/utils/logger.py:6
↓ 1 callers
Class
MedViLL
Multimodal BERT : Masked Language Model + Image Text Matching
models/MedViLL_origin.py:97
↓ 1 callers
Class
MedViLLEncoder
models/MedViLL_origin.py:27
↓ 1 callers
Class
MedViLL_Trainer
models/train_origin.py:17
↓ 1 callers
Class
MultimodalBertEncoder
downstream_task/classification/models/model.py:43
↓ 1 callers
Class
Preprocess4Seq2seqDecoder
Pre-processing steps for pretraining transformer
downstream_task/report_generation_and_vqa/data_loader.py:467
↓ 1 callers
Class
TXT_Encoder
downstream_task/report_generation_and_vqa/cnn_bert.py:133
↓ 1 callers
Class
TXT_Encoder
CNN_BERT/main_cnn_bert.py:105
↓ 1 callers
Class
Vocab
downstream_task/classification/data/vocab.py:1
↓ 1 callers
Class
WordpieceTokenizer
Runs WordPiece tokenization.
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:296
Class
AttrDict
utils/utils.py:227
Class
BertAdamFineTune
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/optimization.py:179
Class
BertForPreTrainingLossMask
refer to BertForPreTraining
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:911
Class
BertForSeq2SeqDecoder
refer to BertForPreTraining
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:1133
Class
BertTokenizer
Runs end-to-end tokenization: punctuation splitting + wordpiece
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:89
Class
BpeOnlineParallelApplier
Apply bpe online to data in parallel
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:568
Class
CNN_BERT
CNN_BERT/main_cnn_bert.py:134
Class
CNN_BERT_Dataset
CNN_BERT/main_cnn_bert.py:38
Class
DataParallelImbalance
downstream_task/report_generation_and_vqa/data_parallel.py:71
Class
Dictionary
downstream_task/report_generation_and_vqa/data_loader.py:79
Class
GatherLayer
Gather tensors from all process, supporting backward propagation.
downstream_task/report_generation_and_vqa/utils.py:238
Class
ImageClf
downstream_task/classification/models/image.py:59
Class
ImageEncoder_pool
downstream_task/classification/models/image.py:74
Class
ImageEncoder_pool
downstream_task/retrieval/image.py:6
Class
ImageEncoder_pool
models/image.py:6
Class
Img2txtDataset
Load image-sentence pairs
downstream_task/report_generation_and_vqa/data_loader.py:190
Class
Img_patch_embedding
downstream_task/classification/models/image.py:183
Class
MaskedLanguageModel
(vocab_size) classification model
downstream_task/retrieval/cxrbert_origin.py:101
Class
MetricLogger
utils/utils.py:137
Class
MetricLogger
downstream_task/report_generation_and_vqa/utils.py:347
Class
MultimodalBertClf
downstream_task/classification/models/model.py:92
Class
Pipeline
Pre-process Pipeline Class : callable
downstream_task/report_generation_and_vqa/loader_utils.py:27
Class
PreTrainedBertModel
An abstract class to handle weights initialization and a simple interface for dowloading and loading pretrained models.
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/model.py:520
Class
Preprocess4Seq2seq
Pre-processing steps for pretraining transformer
downstream_task/report_generation_and_vqa/data_loader.py:288
Class
SyncFunction
downstream_task/report_generation_and_vqa/utils.py:257
Class
WhitespaceTokenizer
downstream_task/report_generation_and_vqa/pytorch_pretrained_bert/tokenization.py:176
Class
fully_use_cnn
downstream_task/classification/models/image.py:152
Class
fully_use_cnn
downstream_task/retrieval/image.py:56
Class
fully_use_cnn
models/image.py:58
Class
random_sample
downstream_task/classification/models/image.py:112