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github.com/SimpleITK/SimpleITK
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Functions
1,847 in github.com/SimpleITK/SimpleITK
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Functions
1,847
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Types & classes
404
↓ 1 callers
Method
SetTranslation
Code/Common/src/sitkEuler3DTransform.cxx:111
↓ 1 callers
Method
SetTranslation
Code/Common/src/sitkSimilarity2DTransform.cxx:100
↓ 1 callers
Method
Similarity3DTransform
construct identity
Code/Common/src/sitkSimilarity3DTransform.cxx:29
↓ 1 callers
Function
SmoothingRecursiveGaussian
Computes the smoothing of an image by convolution with the Gaussian kernels implemented as IIR filters. This function directly calls the exec
Wrapping/Python/SimpleITK/extra.py:431
↓ 1 callers
Function
SystemInformationPrint
Testing/Unit/sitkSystemInformationTest.cxx:58
↓ 1 callers
Function
SystemInformationPrintFile
Testing/Unit/sitkSystemInformationTest.cxx:31
↓ 1 callers
Function
TEST
Testing/Unit/IOTests.cxx:24
↓ 1 callers
Function
TEST
Testing/Unit/sitkImageIOTests.cxx:32
↓ 1 callers
Function
TestDriverInvokeProcess
Testing/Unit/TestBase/sitkCompareDriver.cxx:127
↓ 1 callers
Method
TransformixImageFilter
Code/ElastixTransformixWrappers/src/sitkTransformixImageFilter.cxx:7
↓ 1 callers
Method
Translate
Code/Common/src/sitkScaleSkewVersor3DTransform.cxx:137
↓ 1 callers
Method
Translate
Code/Common/src/sitkSimilarity3DTransform.cxx:146
↓ 1 callers
Method
Translate
Code/Common/src/sitkScaleVersor3DTransform.cxx:133
↓ 1 callers
Method
Translate
Code/Common/src/sitkComposeScaleSkewVersor3DTransform.cxx:137
↓ 1 callers
Method
Translate
Code/Common/src/sitkVersorRigid3DTransform.cxx:128
↓ 1 callers
Method
VersorRigid3DTransform
construct identity
Code/Common/src/sitkVersorRigid3DTransform.cxx:29
↓ 1 callers
Function
WriteImage
Code/IO/src/sitkImageFileWriter.cxx:44
↓ 1 callers
Method
WriteParameterFile
Code/ElastixTransformixWrappers/src/sitkElastixImageFilter.cxx:481
↓ 1 callers
Method
_GenerateFiles
(self)
Utilities/ParseForExplicitInstantiation.py:233
↓ 1 callers
Method
_MakeHeaderAndCodeStrings
(self)
Utilities/ParseForExplicitInstantiation.py:173
↓ 1 callers
Method
_ParseForExtraDirectives
(self)
Utilities/ParseForExplicitInstantiation.py:135
↓ 1 callers
Method
_ParseSymbolFile
(self, inputSymbolsFile)
Utilities/ParseForExplicitInstantiation.py:71
↓ 1 callers
Method
__init__
(self, src, javaFlag=0)
Utilities/GenerateDocs/doxy2swig.py:490
↓ 1 callers
Function
_get_sitk_pixelid
Returns a SimpleITK PixelID given a numpy array.
Wrapping/Python/SimpleITK/extra.py:196
↓ 1 callers
Function
_get_sitk_vector_pixelid
Returns a SimpleITK vector PixelID given a numpy array.
Wrapping/Python/SimpleITK/extra.py:225
↓ 1 callers
Function
analyze_releases
Analyze the release data and compute download statistics. Args: releases (List[Dict]): List of release dictionaries as retrieved from
Utilities/Statistics/github_downloads_analysis.py:85
↓ 1 callers
Function
apply_block_styles
Apply block styles to specified keys in a data structure.
Utilities/GenerateDocs/generate_doc.py:96
↓ 1 callers
Function
apply_block_styles
(obj, *, folded_style_keys=[], literal_style_keys=[])
Utilities/JSON/convert_json_to_yaml.py:73
↓ 1 callers
Function
capitalize_first_letter
(word)
ExpandTemplateGenerator/ExpandTemplate.py:33
↓ 1 callers
Function
check_sitk_to_numpy_type
Helper to check SimpleITK to NumPy type conversion via array view. Args: sitkType: SimpleITK pixel type (e.g., sitk.sitkUInt8) nu
Wrapping/Python/tests/sitkGetArrayViewFromImageTest.py:31
↓ 1 callers
Function
collectargs
Wrapping/Lua/SimpleITKLuaMain.cxx:320
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization has an iteration
Examples/ImageRegistrationMethod3/ImageRegistrationMethod3.py:29
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization has an iteration
Examples/ImageRegistrationMethodBSpline1/ImageRegistrationMethodBSpline1.py:28
↓ 1 callers
Function
command_iteration
Callback invoked each iteration
Examples/ImageRegistrationMethodBSpline3/ImageRegistrationMethodBSpline3.py:28
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization process is running.
Examples/ImageRegistrationMethod2/ImageRegistrationMethod2.py:28
↓ 1 callers
Function
command_iteration
Callback invoked each iteration.
Examples/ImageRegistrationMethodBSpline2/ImageRegistrationMethodBSpline2.py:28
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization has an iteration.
Examples/ImageRegistrationMethod4/ImageRegistrationMethod4.py:28
↓ 1 callers
Function
command_iteration
Callback invoked each iteration.
Examples/ImageRegistrationMethodDisplacement1/ImageRegistrationMethodDisplacement1.py:29
↓ 1 callers
Function
command_iteration
Callback invoked when the filter progresses.
Examples/DemonsRegistration2/DemonsRegistration2.py:28
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization has an iteration
Examples/ImageRegistrationMethodExhaustive/ImageRegistrationMethodExhaustive.py:29
↓ 1 callers
Function
command_iteration
Callback invoked when the optimization process is performing an iteration.
Examples/ImageRegistrationMethod1/ImageRegistrationMethod1.py:28
↓ 1 callers
Function
command_iteration
Callback invoked when the filter processes an iteration.
Examples/DemonsRegistration1/DemonsRegistration1.py:27
↓ 1 callers
Function
command_multi_iteration
Callback invoked before starting a multi-resolution level. The sitkMultiResolutionIterationEvent occurs before the resolution of the transfor
Examples/ImageRegistrationMethodBSpline3/ImageRegistrationMethodBSpline3.py:39
↓ 1 callers
Function
command_multi_iteration
Callback invoked at the end of each multi-resolution iteration.
Examples/ImageRegistrationMethodBSpline2/ImageRegistrationMethodBSpline2.py:34
↓ 1 callers
Function
command_multiresolution_iteration
Callback invoked at the end of each multi-resolution level.
Examples/ImageRegistrationMethodDisplacement1/ImageRegistrationMethodDisplacement1.py:41
↓ 1 callers
Function
configure_logging
Configure logging based on command line arguments.
Utilities/GenerateDocs/generate_doc.py:159
↓ 1 callers
Method
convertImage
(String inputFile, String outputFile, Integer newWidth)
Examples/DicomConvert/DicomConvert.java:92
↓ 1 callers
Function
convert_file
Convert a JSON file to YAML format and write it. Args: json_file_path: Path to the JSON file clobber: Whether to overwrite e
Utilities/JSON/convert_json_to_yaml.py:93
↓ 1 callers
Function
convert_images
Convert multiple DICOM images in parallel to a common image type.
Examples/DicomConvert/DicomConvert.py:77
↓ 1 callers
Function
create_data
Method to create the many temporary images for reading.
Wrapping/Python/tests/ConcurrentImageRead.py:27
↓ 1 callers
Function
create_study_images
Create a set of DICOM images for testing. Args: test_dir: Directory to write the DICOM files studyUID: Study UID to use for the i
Wrapping/Python/tests/sitkGetGDCMSeriesIDs.py:30
↓ 1 callers
Function
create_test_image
Create a test image with specific values for testing. Args: img_type: SimpleITK pixel type (e.g., sitk.sitkInt8) Returns: Si
Wrapping/Python/tests/sitkImageReadWrite.py:30
↓ 1 callers
Function
csv_path
Define the csv_path type for use with argparse. Checks that the given path string is a path to a csv file and that the header of the csv
Utilities/Statistics/pypi_monthly_download_analysis.py:47
↓ 1 callers
Function
do_a
Render a hyperlink node, into a wiki link
Utilities/Maintenance/JIRAHTMLReleaseNoteToWiki.py:47
↓ 1 callers
Function
do_li
Render a li element into a wiki bullet-ed list
Utilities/Maintenance/JIRAHTMLReleaseNoteToWiki.py:42
↓ 1 callers
Function
dolibrary
Wrapping/Lua/SimpleITKLuaMain.cxx:189
↓ 1 callers
Function
download_itk_doxygen
Download and extract the latest ITK Doxygen XML from GitHub releases. Args: temp_dir: Temporary directory to download and extract files
Utilities/GenerateDocs/generate_doc.py:36
↓ 1 callers
Function
example1
Examples/SimpleIO/SimpleIO.cxx:31
↓ 1 callers
Function
example1
A Simple Image Input/Output Example
Examples/SimpleIO/SimpleIO.py:32
↓ 1 callers
Method
example1
(String inputImageFileName, String outputImageFileName)
Examples/SimpleIO/SimpleIO.java:28
↓ 1 callers
Function
example2
Examples/SimpleIO/SimpleIO.cxx:48
↓ 1 callers
Function
example2
A Simple Procedural Image Input/Output Example
Examples/SimpleIO/SimpleIO.py:51
↓ 1 callers
Method
example2
(String inputImageFileName, String outputImageFileName)
Examples/SimpleIO/SimpleIO.java:41
↓ 1 callers
Function
example3
Examples/SimpleIO/SimpleIO.cxx:59
↓ 1 callers
Function
example3
A Simple Transform Input/Output Example
Examples/SimpleIO/SimpleIO.py:64
↓ 1 callers
Method
example3
()
Examples/SimpleIO/SimpleIO.java:48
↓ 1 callers
Method
extract_slice
Extract center slice from 3D image, return as-is for 2D
Wrapping/Python/tests/conftest.py:97
↓ 1 callers
Function
find_xml_file
(xml_path: Path, data_obj: Dict[str, Any])
Utilities/GenerateDocs/generate_doc.py:177
↓ 1 callers
Method
getMessage
Return the message from the previous image comparison.
Testing/Unit/TestBase/sitkImageCompare.h:44
↓ 1 callers
Function
get_prompt
Wrapping/Lua/SimpleITKLuaMain.cxx:198
↓ 1 callers
Function
getargs
Wrapping/Lua/SimpleITKLuaMain.cxx:151
↓ 1 callers
Function
handle_luainit
Wrapping/Lua/SimpleITKLuaMain.cxx:408
↓ 1 callers
Function
handle_script
Wrapping/Lua/SimpleITKLuaMain.cxx:300
↓ 1 callers
Function
html_fragment_to_wiki
(html_fragment)
Utilities/Maintenance/JIRAHTMLReleaseNoteToWiki.py:96
↓ 1 callers
Function
incomplete
Wrapping/Lua/SimpleITKLuaMain.cxx:211
↓ 1 callers
Function
load_config
Load a configuration file (JSON or YAML) based on its extension.
Utilities/JSON/ConfigValidate.py:26
↓ 1 callers
Function
load_configuration
Load configuration from a YAML file.
ExpandTemplateGenerator/ExpandTemplate.py:64
↓ 1 callers
Function
load_data_file
Load a YAML file and return the data.
Utilities/GenerateDocs/generate_doc.py:198
↓ 1 callers
Function
loadline
Wrapping/Lua/SimpleITKLuaMain.cxx:250
↓ 1 callers
Function
main
()
ExpandTemplateGenerator/ExpandTemplate.py:169
↓ 1 callers
Function
main
Generate a simple image and display it using the SimpleITK Show function.
Examples/HelloWorld/HelloWorld.py:27
↓ 1 callers
Function
main
A SimpleITK example demonstrating image registration using the correlation metric and the center of mass initial transformation estim
Examples/ImageRegistrationMethod3/ImageRegistrationMethod3.py:40
↓ 1 callers
Function
main
A SimpleITK example demonstrating image registration using the BSplineTransform and the ComplexCorrelation metric.
Examples/ImageRegistrationMethodBSpline1/ImageRegistrationMethodBSpline1.py:33
↓ 1 callers
Function
main
A SimpleITK script that prints a DICOM image's tags.
Examples/DicomImagePrintTags/DicomImagePrintTags.py:25
↓ 1 callers
Function
main
A SimpleITK example demonstrating image registration with histogram mutual information as a similarity measure.
Examples/ImageRegistrationMethod2/ImageRegistrationMethod2.py:37
↓ 1 callers
Function
main
A SimpleITK example that demonstrates how to apply N4BiasFieldImageFilter to an image.
Examples/N4BiasFieldCorrection/N4BiasFieldCorrection.py:28
↓ 1 callers
Function
main
A SimpleITK example demonstrating the FastMarchingImageFilter class.
Examples/FastMarchingSegmentation/FastMarchingSegmentation.py:26
↓ 1 callers
Function
main
Main function.
Examples/DicomConvert/DicomConvert.py:102
↓ 1 callers
Function
main
A SimpleITK example demonstrating image registration using Mattes mutual information as the metric.
Examples/ImageRegistrationMethod4/ImageRegistrationMethod4.py:37
↓ 1 callers
Function
main
Apply SimpleITK's SmoothGaussianImageFilter to an image.
Examples/SimpleGaussian/SimpleGaussian.py:28
↓ 1 callers
Function
main
A basic SimpleITK image registration example.
Examples/ImageRegistrationMethod1/ImageRegistrationMethod1.py:37
↓ 1 callers
Function
main
(input, output)
Utilities/GenerateDocs/doxy2swig.py:902
↓ 1 callers
Function
main
()
Utilities/Statistics/pypi_monthly_download_analysis.py:426
↓ 1 callers
Function
main
()
Utilities/Statistics/github_downloads_analysis.py:194
↓ 1 callers
Function
main
()
Utilities/JSON/convert_json_to_yaml.py:143
↓ 1 callers
Function
main
()
Utilities/JSON/JSONBeautify.py:26
↓ 1 callers
Function
main
Main entry point for the script.
Utilities/JSON/ConfigValidate.py:71
↓ 1 callers
Method
main
(String argv[])
Examples/SimpleIO/SimpleIO.java:63
↓ 1 callers
Function
makeSliceBySlice
Examples/SliceBySliceDecorator/SliceBySliceDecorator.cxx:126
↓ 1 callers
Function
my_func
(inname, outname, doxyFlag)
Utilities/CSVtoTable.py:41
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