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github.com/ResearAI/DeepReviewer-v2
/ functions
Functions
378 in github.com/ResearAI/DeepReviewer-v2
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Functions
378
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Types & classes
39
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Endpoints
7
Method
__init__
(self, *args, **kwargs)
tests/test_retrieval_disabled_mode.py:159
Method
__init__
(self, *args, **kwargs)
tests/test_retrieval_disabled_mode.py:205
Method
__init__
(self, *args, **kwargs)
tests/test_retrieval_disabled_mode.py:315
Method
__init__
( self, *, base_url: str, model_name: str, tokenizer_path: Optional[st
pasa/pasa/vllm_agent.py:19
Method
__init__
(self, timeout: float)
pasa/pasa/utils.py:58
Method
__init__
(self, model_name)
pasa/pasa/models.py:21
Method
__init__
(self, attrs)
pasa/pasa/paper_node.py:17
Method
__init__
( self, user_query: str, crawler: Agent, # prompt(s) -> response(s)
pasa/pasa/paper_agent.py:32
Function
_append_labeled_blocks
( story: list, styles: StyleSheet1, *, label: str, text: str, render_markdown: bool =
deepreview/report/review_report_pdf.py:1444
Function
_coerce_items
(value: Any)
deepreview/tools/review_tools.py:193
Function
_format_decision
(decision: str | None)
deepreview/report/review_report_pdf.py:1189
Function
_iter_text_sections
(payload: dict[str, Any], keys: Iterable[str])
deepreview/report/review_report_pdf.py:1171
Function
_on_page
(canvas, doc)
deepreview/report/review_report_pdf.py:3820
Function
_replace_command
(match: re.Match[str])
deepreview/report/review_report_pdf.py:429
Function
_run_async_job
(job_id: str, params: Dict[str, Any])
pasa/pasa_server.py:324
Function
_run_pasa_agent
( query: str, expand_layers: int, search_queries: int, search_papers: int, expand_papers:
pasa/legacy/pasa_tool_heavy.py:53
Method
_search_arxiv_fallback
( self, *, query: str | None, question_list: list[str] | None, )
deepreview/adapters/paper_search.py:616
Function
_shutdown_resources
()
pasa/pasa_server.py:213
Method
annotation_count
(self)
deepreview/tools/review_tools.py:480
Function
apply
(job)
deepreview/runner.py:127
Function
apply
(job)
deepreview/tools/review_tools.py:540
Method
apply
(job)
deepreview/tools/review_tools.py:484
Function
apply_completed
(state_obj)
deepreview/runner.py:284
Function
apply_llm_mode
(state)
deepreview/runner.py:328
Function
apply_paper_search_state
(state)
deepreview/runner.py:390
Function
apply_paper_search_state
(job)
deepreview/tools/review_tools.py:850
Function
apply_parsed
(state)
deepreview/runner.py:359
Function
apply_prompt
(state)
deepreview/runner.py:407
Method
batch_infer
(self, prompts: List[str], batch_size: int = 8, sample: bool = False)
pasa/pasa/vllm_agent.py:130
Function
cal_micro
(pred_set, label_set)
pasa/pasa/utils.py:524
Method
client
(self)
deepreview/adapters/llm.py:27
Function
cmd_result
(args: argparse.Namespace)
main.py:167
Function
cmd_run_job
(args: argparse.Namespace)
main.py:243
Function
cmd_status
(args: argparse.Namespace)
main.py:157
Function
cmd_submit
(args: argparse.Namespace)
main.py:108
Function
cmd_watch
(args: argparse.Namespace)
main.py:217
Method
configured
(self)
deepreview/adapters/llm.py:24
Method
configured
(self)
deepreview/adapters/mineru.py:43
Method
do_expand
(self, depth, have_full_paper, crawl_results)
pasa/pasa/paper_agent.py:175
Function
flatten_page_index
(page_index: dict[int, list[str]])
deepreview/adapters/markdown_parser.py:81
Method
get
(self, *args, **kwargs)
tests/test_retrieval_disabled_mode.py:168
Method
get
(self, url, **kwargs)
tests/test_retrieval_disabled_mode.py:214
Method
get_paper_content
(self, new_expand, crawl_prompts, have_full_paper)
pasa/pasa/paper_agent.py:132
Function
health
()
pasa/pasa_server.py:435
Function
index
()
pasa/pasa_server.py:413
Method
infer
(self, prompt: str, sample: bool = False)
pasa/pasa/vllm_agent.py:117
Method
infer_score
Return P(next_token == 'True') for each prompt. This mirrors the original transformers implementation which takes the probability of
pasa/pasa/vllm_agent.py:149
Function
markdown_file_to_pdf
( *, markdown_path: Path, output_path: Path, font_name: str = 'Helvetica', title_font_size
deepreview/report/pdf_export.py:150
Function
mcp_status_update
( ctx: RunContextWrapper[ReviewRuntimeContext], step: str, completed: str | None = Non
deepreview/tools/review_tools.py:522
Function
paper_search
( ctx: RunContextWrapper[ReviewRuntimeContext], query: str | None = None, question_lis
deepreview/tools/review_tools.py:807
Function
pasa_job_cancel
(job_id: str)
pasa/pasa_server.py:611
Function
pasa_job_result
(job_id: str)
pasa/pasa_server.py:593
Function
pasa_job_status
(job_id: str)
pasa/pasa_server.py:582
Function
pasa_search
(query: str, task_cache_dir: Optional[str] = None)
pasa/legacy/pasa_tool_heavy.py:87
Function
pasa_search_async_endpoint
()
pasa/pasa_server.py:540
Function
pasa_search_endpoint
()
pasa/pasa_server.py:489
Function
pdf_annotate
( ctx: RunContextWrapper[ReviewRuntimeContext], page: int, start_line: int, en
deepreview/tools/review_tools.py:641
Function
pdf_jump
( ctx: RunContextWrapper[ReviewRuntimeContext], page: int, )
deepreview/tools/review_tools.py:619
Function
pdf_read_lines
( ctx: RunContextWrapper[ReviewRuntimeContext], page: int, start_line: int, en
deepreview/tools/review_tools.py:588
Function
pdf_search
( ctx: RunContextWrapper[ReviewRuntimeContext], query: str, top_k: int = 8, )
deepreview/tools/review_tools.py:550
Function
question_prompt
( ctx: RunContextWrapper[ReviewRuntimeContext], question: str, options: list[str] | No
deepreview/tools/review_tools.py:983
Method
read_configured
(self)
deepreview/adapters/paper_search.py:70
Function
read_paper
( ctx: RunContextWrapper[ReviewRuntimeContext], items: list[dict[str, Any]], )
deepreview/tools/review_tools.py:965
Function
reset_job_dir
(job_id: UUID | str)
deepreview/state.py:89
Function
review_final_markdown_write
( ctx: RunContextWrapper[ReviewRuntimeContext], markdown: str | None = None, summary:
deepreview/tools/review_tools.py:999
Method
search_configured
(self)
deepreview/adapters/paper_search.py:66
Method
search_paper
(self, queries)
pasa/pasa/paper_agent.py:87
Method
search_ref
(self, section_sources_ori, select_prompts, section_sources, lock)
pasa/pasa/paper_agent.py:152
Method
sort_paper
(item)
pasa/pasa/paper_node.py:42
Function
test_adapter_returns_not_started_when_disabled
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:126
Function
test_adapter_returns_not_started_when_health_check_fails
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:154
Function
test_deepxiv_adapter_requires_token
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:276
Function
test_deepxiv_adapter_searches_directly_with_token
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:198
Function
test_paper_search_tool_does_not_increment_usage_when_search_not_started
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:362
Function
test_pasa_provider_keeps_remote_post_contract
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:308
Function
test_retrieval_disabled_mode_bypasses_search_gates_and_persists_defaults
(monkeypatch, tmp_path)
tests/test_retrieval_disabled_mode.py:389
Method
todic
(self)
pasa/pasa/paper_node.py:28
Function
utcnow
()
deepreview/types.py:11
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