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Functions378 in github.com/ResearAI/DeepReviewer-v2

↓ 1 callersFunction_normalize_latex_text
(value: str)
deepreview/report/review_report_pdf.py:405
↓ 1 callersFunction_normalize_object_type
(value: Any)
deepreview/report/source_annotations.py:16
↓ 1 callersFunction_normalize_overlay_item
(raw: dict[str, Any])
deepreview/report/review_report_pdf.py:2331
↓ 1 callersFunction_normalize_overlay_items
(raw_items: list[dict[str, Any]] | None)
deepreview/report/review_report_pdf.py:2394
↓ 1 callersFunction_normalize_overlay_object_type
(value: object)
deepreview/report/review_report_pdf.py:1958
↓ 1 callersMethod_normalize_remote_paper_item
(self, item: dict)
deepreview/adapters/paper_search.py:784
↓ 1 callersMethod_normalize_search_questions
( self, *, query: str | None, question_list: list[str] | None, )
deepreview/adapters/paper_search.py:282
↓ 1 callersFunction_parse_hex_color
(value: object)
deepreview/report/review_report_pdf.py:1969
↓ 1 callersFunction_parse_overlay_inline_runs
(line: str)
deepreview/report/review_report_pdf.py:2067
↓ 1 callersMethod_parse_via_mineru
( self, *, pdf_path: Path, pdf_bytes: bytes, data_id: str, )
deepreview/adapters/mineru.py:67
↓ 1 callersFunction_pick_font
(markdown_text: str, preferred: str)
deepreview/report/pdf_export.py:22
↓ 1 callersMethod_poll_batch_result
( self, *, client: httpx.AsyncClient, batch_id: str, apply_payload: di
deepreview/adapters/mineru.py:128
↓ 1 callersMethod_question_to_arxiv_query
(self, question: str)
deepreview/adapters/paper_search.py:773
↓ 1 callersMethod_read_arxiv_fallback
(self, items: list[dict])
deepreview/adapters/paper_search.py:667
↓ 1 callersMethod_read_remote
(self, items: list[dict])
deepreview/adapters/paper_search.py:594
↓ 1 callersFunction_render_annotated_source_pdf
( source_pdf_bytes: bytes, source_annotations: list[dict[str, Any]], )
deepreview/report/review_report_pdf.py:3471
↓ 1 callersFunction_render_latex_markup
(value: str)
deepreview/report/review_report_pdf.py:439
↓ 1 callersFunction_required_final_report_alias_map
()
deepreview/tools/review_tools.py:233
↓ 1 callersFunction_resolve_callout_slots
( *, lane_top: float, lane_bottom: float, preferred_top: float, box_height: float, occ
deepreview/report/review_report_pdf.py:2711
↓ 1 callersFunction_resolve_fitz_measure_font
(font_name: str | None)
deepreview/report/review_report_pdf.py:568
↓ 1 callersFunction_resolve_logo_path
()
deepreview/report/review_report_pdf.py:1145
↓ 1 callersFunction_resolve_overlay_font_resource
()
deepreview/report/review_report_pdf.py:1110
↓ 1 callersFunction_resolve_report_fonts
()
deepreview/report/review_report_pdf.py:1050
↓ 1 callersFunction_resolve_serper_api_key
()
pasa/pasa/utils.py:41
↓ 1 callersMethod_run_single_deepxiv_query
(self, question: str)
deepreview/adapters/paper_search.py:376
↓ 1 callersFunction_safe_job_id
(job_id: UUID | str)
deepreview/storage.py:18
↓ 1 callersFunction_sanitize_markdown_for_length_count
(text: str)
deepreview/report/final_report.py:80
↓ 1 callersMethod_search_deepxiv
( self, *, query: str | None, question_list: list[str] | None, )
deepreview/adapters/paper_search.py:304
↓ 1 callersMethod_search_not_started_payload
( self, *, state: PaperSearchRuntimeState, query: str | None, question
deepreview/adapters/paper_search.py:250
↓ 1 callersMethod_search_remote
( self, *, query: str | None, question_list: list[str] | None, )
deepreview/adapters/paper_search.py:541
↓ 1 callersFunction_spawn_worker
(job_id: str)
main.py:82
↓ 1 callersFunction_split_paragraphs
(text: str)
deepreview/report/review_report_pdf.py:1184
↓ 1 callersFunction_strip_leading_section_heading
(*, section_id: str, content: str)
deepreview/tools/review_tools.py:270
↓ 1 callersFunction_submit_response
(job: JobState, completed: bool)
main.py:39
↓ 1 callersFunction_sync_token_usage
(job_id: str, usage: Any)
deepreview/runner.py:121
↓ 1 callersFunction_to_page_rect
(page, rect: dict[str, float])
deepreview/report/review_report_pdf.py:2408
↓ 1 callersFunction_to_rect_dict
( bbox: tuple[float, float, float, float], *, width_ref: float, height_ref: float, )
deepreview/report/source_annotations.py:99
↓ 1 callersFunction_union_rects
(rects: list[dict[str, float]])
deepreview/report/source_annotations.py:116
↓ 1 callersFunction_usage_stub
()
tests/test_retrieval_disabled_mode.py:37
↓ 1 callersFunction_wrap_code_line_by_points
( text_line: str, *, max_width_points: float, font_name: str, font_size: float, )
deepreview/report/review_report_pdf.py:882
↓ 1 callersFunctionannotations_path
(job_id: UUID | str)
deepreview/storage.py:44
↓ 1 callersFunctionapply
(state: JobState)
main.py:68
↓ 1 callersMethodbatch_infer
(self, prompts, batch_size=8, sample=False)
pasa/pasa/models.py:107
↓ 1 callersFunctionbuild_page_index
( markdown: str, content_list: list[dict[str, Any]] | None = None, )
deepreview/adapters/markdown_parser.py:44
↓ 1 callersFunctionbuild_parser
()
main.py:248
↓ 1 callersFunctionbuild_review_agent_system_prompt
( *, source_file_id: str, source_file_name: str, paper_markdown: str, meta_review_raw_outp
deepreview/prompts/review_agent_prompt.py:1429
↓ 1 callersFunctionbuild_review_report_pdf
( *, workspace_title: str, source_pdf_name: str, run_id: str, status: str, decision: s
deepreview/report/review_report_pdf.py:3646
↓ 1 callersFunctionbuild_source_annotations_for_export
( *, annotations: list[AnnotationItem] | list[dict[str, Any]], content_list: list[dict[str, Any]]
deepreview/report/source_annotations.py:165
↓ 1 callersFunctionclean_text
(text)
pasa/pasa/utils.py:261
↓ 1 callersFunctioncreate_dict_for_citation
(ul_element)
pasa/pasa/utils.py:182
↓ 1 callersFunctionevents_path
(job_id: UUID | str)
deepreview/storage.py:40
↓ 1 callersMethodexpand
(self, depth)
pasa/pasa/paper_agent.py:218
↓ 1 callersFunctionextract_text
(entry, soup)
pasa/pasa/utils.py:275
↓ 1 callersFunctionfail_job
(job_id: UUID | str, *, message: str, error: str)
deepreview/state.py:69
↓ 1 callersFunctionfilter_and_update_toc
(entries)
pasa/pasa/utils.py:287
↓ 1 callersFunctionfind_missing_required_sections
(markdown_text: str)
deepreview/report/final_report.py:68
↓ 1 callersFunctiongenerate_full_toc
(soup)
pasa/pasa/utils.py:193
↓ 1 callersFunctionget_1st_section
(sections)
pasa/pasa/utils.py:492
↓ 1 callersFunctionget_2nd_section
(sections)
pasa/pasa/utils.py:509
↓ 1 callersFunctionget_subsection
(sections)
pasa/pasa/utils.py:482
↓ 1 callersFunctiongoogle_search_arxiv_id
(query, num=10, end_date=None)
pasa/pasa/utils.py:102
↓ 1 callersFunctionhas_stop_word
(title, stop_words)
pasa/pasa/utils.py:272
↓ 1 callersMethodinfer
(self, prompt, sample=False)
pasa/pasa/models.py:80
↓ 1 callersFunctionjobs_root
()
deepreview/storage.py:12
↓ 1 callersFunctionkeep_letters
(s)
pasa/pasa/utils.py:361
↓ 1 callersMethodlist_models
(self)
pasa/pasa/vllm_agent.py:51
↓ 1 callersFunctionload_models
Initialize vLLM-backed agents and validate endpoints.
pasa/pasa_server.py:155
↓ 1 callersFunctionmain
(argv: list[str] | None = None)
main.py:280
↓ 1 callersFunctionmain
Run all tests.
pasa/test_pasa_decoupling.py:174
↓ 1 callersFunctionmarkdown_to_pdf
( *, markdown_text: str, output_path: Path, font_name: str = 'Helvetica', title_font_size:
deepreview/report/pdf_export.py:41
↓ 1 callersMethodmineru_poll_templates
(self)
deepreview/config.py:106
↓ 1 callersFunctionnormalize_question_list
(raw: object)
deepreview/adapters/paper_search.py:856
↓ 1 callersFunctionnormalize_ui_language
( value: Optional[str], *, fallback: str = DEFAULT_UI_LANGUAGE, strict: bool = False, )
deepreview/prompts/review_agent_prompt.py:33
↓ 1 callersFunctionparse_html
(html_file)
pasa/pasa/utils.py:299
↓ 1 callersFunctionparse_metadata
Parse concatenated metadata string into authors, title, and journal.
pasa/pasa/utils.py:148
↓ 1 callersMethodparse_pdf
(self, *, pdf_path: Path, data_id: str)
deepreview/adapters/mineru.py:46
↓ 1 callersFunctionparse_pdf_locally
(pdf_bytes: bytes)
deepreview/adapters/markdown_parser.py:19
↓ 1 callersFunctionparse_text
(local_text, tag)
pasa/pasa/utils.py:222
↓ 1 callersMethodpersist_annotations
(self, token_usage: Any | None = None)
deepreview/tools/review_tools.py:499
↓ 1 callersMethodread_papers
(self, *, items: list[dict])
deepreview/adapters/paper_search.py:102
↓ 1 callersFunctionremove_stop_word_sections_and_extract_text
(toc, soup, stop_words=['references', 'acknowledgments', 'about this document', 'apopendix'])
pasa/pasa/utils.py:271
↓ 1 callersMethodrequest
(self, *args, **kwargs)
pasa/pasa/utils.py:62
↓ 1 callersFunctionrun_job
(job_id: str)
deepreview/runner.py:732
↓ 1 callersFunctionrun_job_async
(job_id: str)
deepreview/runner.py:314
↓ 1 callersFunctionsearch_arxiv_id_by_title
Search arxiv id by title. :param title: title of the paper :return: arxiv id of the paper
pasa/pasa/utils.py:416
↓ 1 callersFunctionsearch_paper_by_title
Search paper by title. :param title: title of the paper :return: paper list
pasa/pasa/utils.py:470
↓ 1 callersMethodset_final_markdown
(self, markdown: str)
deepreview/tools/review_tools.py:507
↓ 1 callersFunctiontest_health_endpoint
Test the health endpoint and check if models are loaded.
pasa/test_pasa_decoupling.py:79
↓ 1 callersFunctiontest_search_endpoint
Test the search endpoint with a simple query.
pasa/test_pasa_decoupling.py:122
↓ 1 callersFunctiontest_server_connectivity
Test if the server is reachable.
pasa/test_pasa_decoupling.py:57
↓ 1 callersFunctionvalidate_final_report
( *, markdown: str, min_english_words: int, min_chinese_chars: int, force_english_output:
deepreview/report/final_report.py:120
Method__aenter__
(self)
tests/test_retrieval_disabled_mode.py:162
Method__aenter__
(self)
tests/test_retrieval_disabled_mode.py:208
Method__aenter__
(self)
tests/test_retrieval_disabled_mode.py:318
Method__aexit__
(self, exc_type, exc, tb)
tests/test_retrieval_disabled_mode.py:165
Method__aexit__
(self, exc_type, exc, tb)
tests/test_retrieval_disabled_mode.py:211
Method__aexit__
(self, exc_type, exc, tb)
tests/test_retrieval_disabled_mode.py:321
Method__init__
(self, cfg: BasicLLMConfig)
deepreview/adapters/llm.py:19
Method__init__
(self, cfg: MineruConfig)
deepreview/adapters/mineru.py:39
Method__init__
(self, search_cfg: PaperSearchConfig, read_cfg: PaperReadConfig)
deepreview/adapters/paper_search.py:60
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