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Types & classes32 in github.com/PharMolix/SToFM

⨍ Functions 139◇ Types & classes 32
↓ 2 callersClassSToFMModel
model/se2transformer.py:415
↓ 2 callersClassTruncationStrategy
Possible values for the ``truncation`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/collator_for_classification.py:45
↓ 2 callersClassTruncationStrategy
Possible values for the ``truncation`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/pretrainer.py:72
↓ 1 callersClassCellEncoderCollator
model/utils.py:27
↓ 1 callersClassCellEncoderTokenizer
model/utils.py:8
↓ 1 callersClassCustomDistributedLengthGroupedSampler
r""" Distributed Sampler that samples indices in a way that groups together features of the dataset of roughly the same length while keeping a
geneformer_001/geneformer/pretrainer.py:692
↓ 1 callersClassGaussianModule
model/se2transformer.py:28
↓ 1 callersClassGeneformerPreCollator
geneformer_001/geneformer/pretrainer.py:107
↓ 1 callersClassLayerDropModuleList
model/se2transformer.py:17
↓ 1 callersClassMultiheadAttention
model/se2transformer.py:60
↓ 1 callersClassPaddingStrategy
Possible values for the ``padding`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/collator_for_classification.py:58
↓ 1 callersClassPaddingStrategy
Possible values for the ``padding`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/pretrainer.py:84
↓ 1 callersClassPooler
get_embeddings.py:51
↓ 1 callersClassPrecollatorForGeneAndCellClassification
geneformer_001/geneformer/collator_for_classification.py:82
↓ 1 callersClassSToFMTranscriptomeTokenizer
preprocessing/preprocess.py:5
↓ 1 callersClassSToFM_Collator
model/extraction.py:348
↓ 1 callersClassTransformerEncoder
model/se2transformer.py:282
↓ 1 callersClassTransformerEncoderLayer
model/se2transformer.py:212
ClassDataCollatorForCellClassification
geneformer_001/geneformer/collator_for_classification.py:585
ClassDataCollatorForGeneClassification
Data collator that will dynamically pad the inputs received, as well as the labels. Args: tokenizer (:class:`~transformers.PreTrained
geneformer_001/geneformer/collator_for_classification.py:524
ClassEmbExtractor
geneformer_001/geneformer/emb_extractor.py:198
ClassExplicitEnum
Enum with more explicit error message for missing values.
geneformer_001/geneformer/collator_for_classification.py:33
ClassExplicitEnum
Enum with more explicit error message for missing values.
geneformer_001/geneformer/pretrainer.py:59
ClassGeneformerPretrainer
geneformer_001/geneformer/pretrainer.py:597
ClassInSilicoPerturber
geneformer_001/geneformer/in_silico_perturber.py:594
ClassInSilicoPerturberStats
geneformer_001/geneformer/in_silico_perturber_stats.py:413
ClassSToFMConfig
model/utils.py:56
ClassSToFMForMaskedLM
model/se2transformer.py:459
ClassSToFMPreTrainedModel
model/se2transformer.py:348
ClassTensorType
Possible values for the ``return_tensors`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/collator_for_classification.py:70
ClassTensorType
Possible values for the ``return_tensors`` argument in :meth:`PreTrainedTokenizerBase.__call__`. Useful for tab-completion in an IDE.
geneformer_001/geneformer/pretrainer.py:95
ClassTranscriptomeTokenizer
geneformer_001/geneformer/tokenizer.py:49