Types & classes — github.com/ParBLiSS/FastANI

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Types & classes131 in github.com/ParBLiSS/FastANI

⨍ Functions 451◇ Types & classes 131

↓ 2 callersClassusage_lines

src/common/clipp.h:6039

↓ 1 callersClassMap

* @class skch::Map * @brief L1 and L2 mapping stages */

src/map/include/computeMap.hpp:35

↓ 1 callersClassdocumentation

src/common/clipp.h:6518

↓ 1 callersClassflip_bool

/ * * @brief flips bools * *****************************************************************************/

src/common/clipp.h:507

↓ 1 callersClasssimple_action_adapter

src/common/clipp.h:1190

↓ 1 callersClasssubrange

/ * * @brief (start,size) index range * *****************************************************************************/

src/common/clipp.h:94

tests/fastani_tests.cpp:14

ClassCGI_Results

Final format to save CGI results

src/cgi/include/cgid_types.hpp:68

ClassContigInfo

Metadata recording for contigs in the reference DB

src/map/include/base_types.hpp:72

src/map/include/slidingMap.hpp:58

src/common/prettyprint.hpp:180

ClassL1_candidateLocus_t

src/map/include/computeMap.hpp:40

ClassL2_mapLocus_t

src/map/include/computeMap.hpp:52

ClassMIIteratorL2

* @class skch::MIIteratorL2 * @brief L1 and L2 mapping stages */

src/map/include/MIIteratorL2.hpp:25

ClassMappingResult

Final mapping result

src/map/include/base_types.hpp:89

ClassMappingResult_CGI

Saves mapping results from Mashmap

src/cgi/include/cgid_types.hpp:16

ClassMinimizerInfo

Information about each minimizer

src/map/include/base_types.hpp:22

ClassMinimizerMetaData

Type for map value type used for L1 stage lookup index

src/map/include/base_types.hpp:57

src/map/include/slidingMap.hpp:73

ClassParameters

* @brief configuration parameters for building sketch * expected to be initialized using command line arguments */

src/map/include/map_parameters.hpp:22

ClassQueryMetaData

src/map/include/base_types.hpp:80

* @class skch::Sketch * @brief sketches and indexes the reference (subject sequence) * @details * 1. Minimizers are com

src/map/include/winSketch.hpp:44

ClassSlideMapper

src/map/include/slidingMap.hpp:26

src/map/include/commonFunc.hpp:186

Class__kstring_t

src/common/kseq.h:83

Classaction_provider

src/common/clipp.h:1181

Classarg_mapping

src/common/clipp.h:4505

Classarray_wrapper_n

src/common/prettyprint.hpp:368

Classassign_value

src/common/clipp.h:482

Classbucket_print_wrapper

src/common/prettyprint.hpp:387

src/common/clipp.h:2591

ClasscompareMappingResult_withIdentity

src/cgi/include/cgid_types.hpp:58

ClasscompareMappingResult_withQuerySeqBucket

src/cgi/include/cgid_types.hpp:31

ClasscompareMappingResult_withRefBinBucket

src/cgi/include/cgid_types.hpp:45

ClasscompareMinimizersByPos

src/map/include/winSketch.hpp:326

src/common/clipp.h:2796

src/common/clipp.h:6084

Classcustom_delims

src/common/prettyprint.hpp:349

Classcustom_delims_base

src/common/prettyprint.hpp:322

Classcustom_delims_wrapper

src/common/prettyprint.hpp:330

src/common/clipp.h:553

Classdelimiters

src/common/prettyprint.hpp:89

Classdelimiters< ::std::multiset<T, TComp, TAllocator>, char>

src/common/prettyprint.hpp:269

Classdelimiters< ::std::multiset<T, TComp, TAllocator>, wchar_t>

src/common/prettyprint.hpp:275

Classdelimiters< ::std::pair<T1, T2>, wchar_t>

src/common/prettyprint.hpp:309

Classdelimiters< ::std::set<T, TComp, TAllocator>, char>

src/common/prettyprint.hpp:257

Classdelimiters< ::std::set<T, TComp, TAllocator>, wchar_t>

src/common/prettyprint.hpp:263

Classdelimiters< ::std::tuple<Args...>, wchar_t>

src/common/prettyprint.hpp:314

Classdelimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, char>

src/common/prettyprint.hpp:293

Classdelimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, wchar_t>

src/common/prettyprint.hpp:299

Classdelimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, char>

src/common/prettyprint.hpp:281

Classdelimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, wchar_t>

src/common/prettyprint.hpp:287

Classdelimiters<T, char>

src/common/prettyprint.hpp:248

Classdelimiters<T, wchar_t>

src/common/prettyprint.hpp:250

Classdelimiters<std::pair<T1, T2>, char>

src/common/prettyprint.hpp:307

Classdelimiters<std::tuple<Args...>, char>

src/common/prettyprint.hpp:312

Classdelimiters_values

src/common/prettyprint.hpp:77

Classdepth_first_traverser

src/common/clipp.h:2792

Classformatting_ostream

src/common/clipp.h:5713

/ * * @brief group of parameters and/or other groups; * can be configured to act as a group of alternatives (exclusive match) * ***********

src/common/clipp.h:2576

Classhas_begin_end

src/common/prettyprint.hpp:49

Classhas_const_iterator

src/common/prettyprint.hpp:38

Classhas_size_getter

src/common/clipp.h:272

src/common/clipp.h:531

Classincrement_by

src/common/clipp.h:575

/ * * @brief predicate that returns true if the input string represents an integer * (with optional digit separators) * *******************

src/common/clipp.h:1713

Classis_callable

src/common/clipp.h:203

Classis_callable<Fn, Ret(Args...)>

src/common/clipp.h:207

Classis_callable<Fn, void(Args...)>

src/common/clipp.h:218

Classis_callable<Fn,Ret()>

src/common/clipp.h:212

Classis_callable<Fn,void()>

src/common/clipp.h:223

Classis_container

src/common/prettyprint.hpp:225

Classis_container<T[N]>

src/common/prettyprint.hpp:231

Classis_container<char[N]>

src/common/prettyprint.hpp:234

Classis_container<std::pair<T1, T2>>

src/common/prettyprint.hpp:240

Classis_container<std::tuple<Args...>>

src/common/prettyprint.hpp:243

Classis_container<std::valarray<T>>

src/common/prettyprint.hpp:237

Classis_input_range

src/common/clipp.h:251

/ * * @brief predicate that returns true if the length of the input string * is wihtin a given interval * *********************************

src/common/clipp.h:1826

Classlimits_clamped

src/common/clipp.h:314

Classlimits_clamped<T,V,false>

src/common/clipp.h:327

src/common/clipp.h:351

Classmake<bool>

src/common/clipp.h:360

Classmake<char>

src/common/clipp.h:408

Classmake<double>

src/common/clipp.h:454

Classmake<float>

src/common/clipp.h:447

src/common/clipp.h:426

Classmake<long double>

src/common/clipp.h:461

Classmake<long int>

src/common/clipp.h:433

Classmake<long long int>

src/common/clipp.h:440

Classmake<short int>

src/common/clipp.h:419

Classmake<std::string>

src/common/clipp.h:468

Classmake<unsigned char>

src/common/clipp.h:368

Classmake<unsigned int>

src/common/clipp.h:384

Classmake<unsigned long int>

src/common/clipp.h:392

Classmake<unsigned long long int>

src/common/clipp.h:400

Classmake<unsigned short int>

src/common/clipp.h:376

src/common/clipp.h:6749

Classmap_arg_to

src/common/clipp.h:601

Classmap_arg_to<bool>

src/common/clipp.h:641

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