This method needed to be reimplemented to - check CV term values - handle referenceableParamGroups - check if binaryDataArray name and type match
| 31 | // - handle referenceableParamGroups |
| 32 | // - check if binaryDataArray name and type match |
| 33 | void MzMLValidator::startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const Attributes & attributes) |
| 34 | { |
| 35 | String tag = sm_.convert(qname); |
| 36 | String parent_tag; |
| 37 | if (!open_tags_.empty()) |
| 38 | { |
| 39 | parent_tag = open_tags_.back(); |
| 40 | } |
| 41 | String path = getPath_() + "/" + cv_tag_ + "/@" + accession_att_; |
| 42 | open_tags_.push_back(tag); |
| 43 | |
| 44 | if (tag == "referenceableParamGroup") |
| 45 | { |
| 46 | current_id_ = attributeAsString_(attributes, "id"); |
| 47 | } |
| 48 | else if (tag == "referenceableParamGroupRef") |
| 49 | { |
| 50 | const std::vector<CVTerm> & terms = param_groups_[attributeAsString_(attributes, "ref")]; |
| 51 | for (Size i = 0; i < terms.size(); ++i) |
| 52 | { |
| 53 | handleTerm_(path, terms[i]); |
| 54 | } |
| 55 | } |
| 56 | else if (tag == "binaryDataArray") |
| 57 | { |
| 58 | binary_data_array_ = ""; |
| 59 | binary_data_type_ = ""; |
| 60 | } |
| 61 | else if (tag == cv_tag_) |
| 62 | { |
| 63 | //extract accession, name and value |
| 64 | CVTerm parsed_term; |
| 65 | getCVTerm_(attributes, parsed_term); |
| 66 | |
| 67 | //check if the term is unknown |
| 68 | if (!cv_.exists(parsed_term.accession)) |
| 69 | { |
| 70 | warnings_.push_back(String("Unknown CV term: '") + parsed_term.accession + " - " + parsed_term.name + "' at element '" + getPath_(1) + "'"); |
| 71 | return; |
| 72 | } |
| 73 | |
| 74 | //check if the term is obsolete |
| 75 | if (cv_.getTerm(parsed_term.accession).obsolete) |
| 76 | { |
| 77 | warnings_.push_back(String("Obsolete CV term: '") + parsed_term.accession + " - " + parsed_term.name + "' at element '" + getPath_(1) + "'"); |
| 78 | } |
| 79 | |
| 80 | //actual handling of the term |
| 81 | if (parent_tag == "referenceableParamGroup") |
| 82 | { |
| 83 | param_groups_[current_id_].push_back(parsed_term); |
| 84 | } |
| 85 | else |
| 86 | { |
| 87 | handleTerm_(path, parsed_term); |
| 88 | } |
| 89 | } |
| 90 | } |