Method endElement

src/openms/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp:155–208

    }

    void UnimodXMLHandler::endElement(const XMLCh* const /*uri*/, const XMLCh* const /*local_name*/, const XMLCh* const qname)
    {
      tag_ = String(sm_.convert(qname));

      // write the modifications to vector
      if (tag_ == "umod:mod" || tag_ == "mod")
      {
        modification_->setDiffAverageMass(avge_mass_);
        modification_->setDiffMonoMass(mono_mass_);
        modification_->setDiffFormula(diff_formula_);
        for (Size i = 0; i != sites_.size(); ++i)
        {
          ResidueModification* new_mod = new ResidueModification(*modification_);
          new_mod->setOrigin(sites_[i]);
          new_mod->setTermSpecificity(term_specs_[i]);
          new_mod->setNeutralLossDiffFormulas(neutral_loss_diff_formulas_[i]);
          modifications_.push_back(new_mod);
        }

        avge_mass_ = 0.0;
        mono_mass_ = 0.0;
        diff_formula_ = EmpiricalFormula();
        term_specs_.clear();
        sites_.clear();
        neutral_loss_diff_formulas_.clear();

        delete modification_;
        return;
      }

      if (tag_ == "umod:specificity" || tag_ == "specificity")
      {
        if (was_valid_peptide_modification_) // as we exclude "Protein" modifications (see above)
        {
          neutral_loss_diff_formulas_.push_back(neutral_loss_diff_formula_);
          modification_->setNeutralLossMonoMasses(neutral_loss_mono_masses_);
          modification_->setNeutralLossAverageMasses(neutral_loss_avg_masses_);
          neutral_loss_diff_formula_.clear();
          neutral_loss_mono_masses_.clear();
          neutral_loss_avg_masses_.clear();
        }
      }

      if ( (tag_ == "umod:NeutralLoss" || tag_ == "NeutralLoss") && !diff_formula_.isEmpty() )
      {
        // now diff_formula_ contains the neutral loss diff formula
        neutral_loss_diff_formula_.push_back(diff_formula_);
        neutral_loss_mono_masses_.push_back(mono_mass_);
        neutral_loss_avg_masses_.push_back(avge_mass_);
        avge_mass_ = 0.0;
        mono_mass_ = 0.0;
        diff_formula_ = EmpiricalFormula();
      }
    }

    void UnimodXMLHandler::characters(const XMLCh* const /*chars*/, const XMLSize_t /*length*/)
    {