Function cmpDataIntensity

src/tests/class_tests/openms/source/SqMassFile_test.cpp:27–64

void cmpDataIntensity(const MSExperiment& exp1, const MSExperiment& exp2, double abs_tol = 1e-5, double rel_tol = 1+1e-5)
{
  // Logic of comparison: if the absolute difference criterion is fulfilled,
  // the relative one does not matter. If the absolute difference is larger
  // than allowed, the test does not fail if the relative difference is less
  // than allowed.
  // Note that the sample spectrum intensity has a very large range, from
  // 0.00013 to 183 838 intensity and encoding both values with high accuracy
  // is difficult.

  TOLERANCE_ABSOLUTE(abs_tol)
  TOLERANCE_RELATIVE(rel_tol)
  for (Size i = 0; i < exp1.getNrSpectra(); i++)
  {
    TEST_EQUAL(exp1.getSpectra()[i].size(), exp2.getSpectra()[i].size())
    for (Size k = 0; k < exp1.getSpectra()[i].size(); k++)
    {
      // slof is no good for values smaller than 5
      // if (exp.getSpectrum(i)[k].getIntensity() < 1.0) {continue;} 
      auto a = exp1.getSpectra()[i][k].getIntensity();
      auto b = exp2.getSpectra()[i][k].getIntensity();
      // avoid the console clutter if nothing interesing happens
      if (!TEST::isRealSimilar(a, b)) TEST_REAL_SIMILAR(a, b)
    }
  }

  for (Size i = 0; i < exp1.getNrChromatograms(); i++)
  {
    TEST_EQUAL(exp1.getChromatograms()[i].size() == exp2.getChromatograms()[i].size(), true)
    for (Size k = 0; k < exp1.getChromatograms()[i].size(); k++)
    {
      auto a = exp1.getChromatograms()[i][k].getIntensity();
      auto b = exp2.getChromatograms()[i][k].getIntensity();
      // avoid the console clutter if nothing interesing happens
      if (!TEST::isRealSimilar(a, b)) TEST_REAL_SIMILAR(a, b)
    }
  }
}

void cmpDataMZ(const MSExperiment& exp1, const MSExperiment& exp2, double abs_tol = 1e-5, double rel_tol = 1+1e-5)
{