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Functions500 in github.com/NinePts/OntoGraph

↓ 2 callersFunctiono
(t,e)
src/main/resources/static/lib/js/backbone-min.js:1
↓ 2 callersMethodprocessDomainOrRangeQueryResults
Processes the results of a query for the domain or range classes of a property. If there are no results, then the array is set to the value, "owl:Thin
src/main/java/graph/GraphDBAccess.java:1373
↓ 2 callersMethodprocessRDFStructuredValue
Parses the components of a structured RDF datatype value, taking the rdf:value into account (if it exists) and any other predicated information @para
src/main/java/graph/GraphDBAccess.java:1470
↓ 2 callersFunctionredrawPad
()
src/main/resources/static/lib/js/jscolor.js:1645
↓ 2 callersFunctionredrawSld
()
src/main/resources/static/lib/js/jscolor.js:1686
↓ 2 callersFunctionregisterDragEvents
(doc, offset)
src/main/resources/static/lib/js/jscolor.js:598
↓ 2 callersMethodremoveOccurrencesOfEntities
Removes the indicated (duplicate) node or edge declarations from the GraphML input string. @param graphML String @return duplicates List<String> hold
src/main/java/graph/GraphController.java:909
↓ 2 callersMethodsearchForDuplicates
Searches for duplicate node or edge ids in the GraphML String. @param graphML String @param entityType String, either "node" or "edge" @return dupl
src/main/java/graph/GraphController.java:930
↓ 2 callersMethodsetupUMLEdgeDetailsModel
Sets up an EdgeDetailsModel with model defaults. @param requestModel GraphRequestModel @return EdgeDetailsModel
src/main/java/graph/graphmloutputs/UMLGraphCreation.java:590
↓ 2 callersMethodvalidateCustomPropertyGraph
Validates the user input for a custom property graph. Checks that all required customization options are provided and that they are one of the expecte
src/main/java/graph/GraphRequestValidator.java:286
↓ 1 callersFunctionB
(a,b)
src/main/resources/static/lib/js/jquery.min.js:2
↓ 1 callersFunctionDa
(a)
src/main/resources/static/lib/js/jquery.min.js:3
↓ 1 callersFunctionEa
(a)
src/main/resources/static/lib/js/jquery.min.js:3
↓ 1 callersFunctionGa
(a,b)
src/main/resources/static/lib/js/jquery.min.js:3
↓ 1 callersFunctionH
(a)
src/main/resources/static/lib/js/jquery.min.js:2
↓ 1 callersFunctionN
(n,t,r,e)
src/main/resources/static/lib/js/underscore-min.js:5
↓ 1 callersFunctionRGB_HSV
(r, g, b)
src/main/resources/static/lib/js/jscolor.js:1307
↓ 1 callersFunctionWb
(a,b,c)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctionXb
(a,b,c,d)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctionYb
(a)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctionZb
(a)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctiona
(t,e,r)
src/main/resources/static/lib/js/backbone-min.js:1
↓ 1 callersMethodaddClassNodes
Add the nodes that represent the domain and object range classes @param requestModel GraphRequestModel holding all details of user request @param o
src/main/java/graph/graphmloutputs/PropertiesGraphCreation.java:148
↓ 1 callersMethodaddDatatypeNodes
(GraphRequestModel requestModel, Set<String> datatypes)
src/main/java/graph/graphmloutputs/PropertiesGraphCreation.java:236
↓ 1 callersMethodaddDatatypePropertyEdge
Adds datatype property edges between an individual and the property values (for a given property). @param requestModel GraphRequestModel with visual
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:142
↓ 1 callersMethodaddDatatypePropertyValue
Adds datatype value nodes for a given property. @param requestModel GraphRequestModel holding visualization details @param ontologyPrefix String th
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:162
↓ 1 callersMethodaddEquivalentDisjoint
Add equivalence and disjoint details for a class to another class. @param requestModel GraphRequestModel @param classes List<ClassModel> to determi
src/main/java/graph/graphmloutputs/GraphMLUtils.java:775
↓ 1 callersMethodaddImageNodeOrNote
For a union, intersection or complement, add either an image (if the visualization is VOWL), a node (if the visualization is Graffoo) or a note to ind
src/main/java/graph/graphmloutputs/GraphMLUtils.java:821
↓ 1 callersMethodaddIndividuals
Add individual nodes for all unique individuals. @param requestModel GraphRequestModel with individual visualization details @param ontologyPrefix
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:181
↓ 1 callersMethodaddMissingNodesAndEdges
"Both" class and property diagrams are generated by processing a class graph and then a property graph. But, the property graph will likely have overl
src/main/java/graph/graphmloutputs/PropertiesGraphCreation.java:270
↓ 1 callersMethodaddObjectPropertyEdges
Adds object property edges between an individual and the property values (for a given property). If the value of an object property is an external ind
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:218
↓ 1 callersMethodaddRestrictionNote
Adds a Restriction UML note. @param visualization String @param restrictionDetails List<String> with the text of the restriction @param valuesFrom
src/main/java/graph/graphmloutputs/GraphMLUtils.java:264
↓ 1 callersMethodaddTypeOfEdges
Draw typeOf relationships between types/classes and individuals. @param requestModel GraphRequestModel with individual visualization details @param
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:245
↓ 1 callersMethodaddTypes
Add type nodes (classes) for all individuals @param requestModel GraphRequestModel with visualization details @param ontologyPrefix String that is
src/main/java/graph/graphmloutputs/IndividualsGraphCreation.java:287
↓ 1 callersMethodaddUMLNode
Add a UML node in graphML format. @param entityName String specifying the class or individual id @param entityLabel String @param attributes List<
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:466
↓ 1 callersFunctionadjustGraphType
(value)
src/main/resources/static/js/main.js:90
↓ 1 callersFunctionadjustVisualization
(value)
src/main/resources/static/js/main.js:128
↓ 1 callersFunctionc
()
src/main/resources/static/lib/js/pace.min.js:2
↓ 1 callersMethodcheckBlankNodes
Checks that the expected number of blank nodes are included in the output XML, and that they have one of the specified NodeLabel values. @param visu
src/test/java/graph/TestUtils.java:221
↓ 1 callersMethodcheckDBLoad
Check if Stardog loaded the ontology - if there are no triples, then drop the db @param snarlTemplate SnarlTemplate with server details @param data
src/main/java/graph/GraphDBAccess.java:229
↓ 1 callersMethodcheckEdgeDetails
Checks that the edgeText is valid per one of the control edge models. @param id String for error reporting @param edgeText String with the edge ele
src/test/java/graph/TestUtils.java:304
↓ 1 callersMethodcheckExpected
Performs a general check that each of the expected nodes and edges is present in the output GraphML. @param visualization String @param testXML Str
src/test/java/graph/TestUtils.java:362
↓ 1 callersMethodcheckNodeDetails
Checks that the nodeText is valid per one of the control node models. @param id String for error reporting @param nodeText String with the node ele
src/test/java/graph/TestUtils.java:431
↓ 1 callersMethodcloseGraph
Adds finishing brackets for the GraphML file. @return String GraphML output
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:545
↓ 1 callersMethodcloseVOWLGraph
Adds finishing brackets and the necessary image (right-pointing arrow) for a UML GraphML file. @return String GraphML output
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:563
↓ 1 callersMethodcompareTestToControl
Compares the expected values for the title, prefixes, and all the nodes and edges with the values in the generated XML. @param visualization String
src/test/java/graph/TestUtils.java:509
↓ 1 callersMethodcreateArrowMap
()
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:123
↓ 1 callersMethodcreateClassConventions
Defines the graphing conventions for a class/subclass hierarchy diagram @param requestModel GraphRequestModel holding all the details of the request
src/main/java/graph/GraphController.java:199
↓ 1 callersMethodcreateClassGraph
Processing to get the class details from an ontology and generate the GraphML output. @param requestModel GraphRequestModel @param ontologyPrefix S
src/main/java/graph/GraphController.java:265
↓ 1 callersMethodcreateColorMap
()
src/main/java/graph/GraphController.java:102
↓ 1 callersMethodcreateGraph
Performs all the processing to load the ontology into Stardog and then query it for the appropriate details to produce the graph requested in GraphReq
src/main/java/graph/GraphController.java:286
↓ 1 callersMethodcreateGraphMLAndCompareToMaster
Compares the test-generated GraphML output to the master reference for class graphs. @param GraphRequestModel GraphRequestModel @throws Exception (I
src/test/java/graph/CustomizationTest.java:117
↓ 1 callersMethodcreateIndividualsConventions
Defines the graphing conventions for an individuals graph @param requestModel GraphRequestModel holding all the details of the request from the brow
src/main/java/graph/GraphController.java:368
↓ 1 callersMethodcreateIndividualsGraph
Process to get individuals and their attributes to generate the GraphML output. @param requestModel GraphRequestModel details @param ontologyPrefix
src/main/java/graph/GraphController.java:433
↓ 1 callersMethodcreateLineMap
()
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:138
↓ 1 callersMethodcreateNodeMap
()
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:107
↓ 1 callersMethodcreatePrefixesBox
Creates the two text lists for any prefixes and their corresponding URIs. @param prefixes List<PrefixModel> @return GraphML String
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:587
↓ 1 callersMethodcreatePropertyConventions
Defines the graphing conventions for an object and datatype property diagram @param requestModel GraphRequestModel holding all the details of the req
src/main/java/graph/GraphController.java:456
↓ 1 callersMethodcreateTitleBox
Creates the text for the title/graph info box. @param title String @param ontologyURI String @return GraphML String
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:614
↓ 1 callersMethodcreateUMLConventions
Defines the graphing conventions for a UML graph (either a class/property or individual graph) @param requestModel GraphRequestModel holding all deta
src/main/java/graph/GraphController.java:568
↓ 1 callersMethodcreateUMLGraph
Processing to get the details on all classes, datatype and object properties OR all individuals, and generate the GraphML output. @param requestMode
src/main/java/graph/GraphController.java:607
↓ 1 callersFunctiond
(b)
src/main/resources/static/lib/js/bootstrap.min.js:6
↓ 1 callersFunctiondb
(a,b,c)
src/main/resources/static/lib/js/jquery.min.js:3
↓ 1 callersFunctiondc
(a,b,c,d)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctiondetachPicker
()
src/main/resources/static/lib/js/jscolor.js:1356
↓ 1 callersMethoddetermineEdgeMatch
Determines if the EdgeTestDetailsModel is a match for/holds the comparison details for the edgeText. @param id String holding the edge id @param edge
src/test/java/graph/TestUtils.java:590
↓ 1 callersFunctiondisplayPopovers
()
src/main/resources/static/js/main.js:163
↓ 1 callersFunctiondownloadGraph
(strData, strFileName, strMimeType)
src/main/resources/static/js/main.js:173
↓ 1 callersMethoddropDatabase
Removes a database from Stardog, but first checks that the db exists @param databaseName String
src/main/java/graph/GraphDBAccess.java:247
↓ 1 callersFunctione
()
src/main/resources/static/lib/js/bootstrap.min.js:6
↓ 1 callersFunctionf
()
src/main/resources/static/lib/js/bootstrap.min.js:7
↓ 1 callersFunctiong
(b)
src/main/resources/static/lib/js/bootstrap.min.js:6
↓ 1 callersMethodgenerateGraph
Generates the GraphML output given the details of the GraphRequestModel. @param requestModel GraphRequestModel @param ontPrefixAndCurrGraphML List<
src/main/java/graph/GraphController.java:658
↓ 1 callersMethodgetAllProperties
Queries the database to get all annotation, datatype and object properties for an ontology. @param snarlTemplate SnarlTemplate with server details @p
src/main/java/graph/GraphDBAccess.java:1133
↓ 1 callersMethodgetAttributesWithPropDetails
Gets the type(s) for the attribute/datatype property and whether the property is functional. @param attributes List<String> of the applicable dataty
src/main/java/graph/graphmloutputs/UMLGraphCreation.java:450
↓ 1 callersMethodgetAttributesWithValues
Get the values and datatypes for attributes (datatype properties) when processing an instance graph. @param instance IndividualModel @return String l
src/main/java/graph/graphmloutputs/UMLGraphCreation.java:475
↓ 1 callersMethodgetClassRelationships
Get all equivalent and disjoint classes in the loaded ontology, also get all enumerations/oneOfs @param snarlTemplate SnarlTemplate with server deta
src/main/java/graph/GraphDBAccess.java:416
↓ 1 callersMethodgetClasses
Get all classes and their superclasses in the loaded ontology @param reasoningType String ("reasoningTrue" or "reasoningFalse") @param snarlTemplat
src/main/java/graph/GraphDBAccess.java:268
↓ 1 callersMethodgetClassesForUML
Get all classes and properties for UML output @param snarlTemplate SnarlTemplate with server details @param prefixes List of PrefixModels @param c
src/main/java/graph/GraphDBAccess.java:348
↓ 1 callersMethodgetEquivalentDetails
For a blank node, get the details of the referenced classes if it is a complementOf, unionOf, intersectionOf or oneOf declaration. @param blankNode
src/main/java/graph/graphmloutputs/GraphMLUtils.java:889
↓ 1 callersMethodgetExternallyDefinedClasses
Get all classes that are referenced as superclasses or equivalent/disjointClasses but that are defined external to the ontology. @param snarlTemplat
src/main/java/graph/GraphDBAccess.java:483
↓ 1 callersMethodgetGraphDetails
Gets the details for several arrays and hash maps, as well as starting the GraphML output. @param requestModel GraphRequestModel @param ontologyURI
src/main/java/graph/GraphController.java:730
↓ 1 callersMethodgetOntologyPrefix
Determines the URI of the ontology, which is needed to determine "external" classes for VOWL visualization. @param snarlTemplate SnarlTemplate @param
src/main/java/graph/GraphController.java:797
↓ 1 callersMethodgetPrefixes
Get all prefixes and their corresponding URLs in the loaded ontology @param conn Stardog Connection @return List<PrefixModel> of prefixes with detai
src/main/java/graph/GraphDBAccess.java:612
↓ 1 callersMethodgetPropDetails
Returns the appropriate UML details for an attribute @param attributes List<String> of the applicable datatype properties @param propertyModel Prop
src/main/java/graph/graphmloutputs/UMLGraphCreation.java:510
↓ 1 callersMethodgetPropertyEdgeDetails
Get the correct arrow shapes, label, edge and label colors, etc. for the property edge. @param requestModel GraphRequestModel defining visualization
src/main/java/graph/graphmloutputs/GraphMLUtils.java:966
↓ 1 callersMethodgetRestrictionNoteDetails
Get the height and width of the restriction note/node. @param restrictionDetails List<String> with the text of the restriction @param valuesFrom St
src/main/java/graph/graphmloutputs/GraphMLUtils.java:939
↓ 1 callersMethodgetStandaloneBlankNodes
Get all blank nodes that are defined as oneOf enumerations, but are NOT defined as an equivalentClass. @param snarlTemplate SnarlTemplate with serve
src/main/java/graph/GraphDBAccess.java:787
↓ 1 callersMethodgetUntypedIndividuals
Get object and datatype property details for individuals that are defined in the ontology, but do not have an rdf:type (for example, restrictions that
src/main/java/graph/GraphDBAccess.java:1228
↓ 1 callersMethodhandleVOWLSplitting
Creates unique rdfs:Literals, rdfs:Resources or owl:Things as required for VOWL splitting by property or class (respectively). @param propertyName S
src/main/java/graph/graphmloutputs/GraphMLOutputDetails.java:911
↓ 1 callersFunctionla
(a)
src/main/resources/static/lib/js/jquery.min.js:2
↓ 1 callersMethodloadFileToDB
Loads input file with given file format as named graph to Stardog database. @param snarlTemplate (returned, associated with the data source for the
src/main/java/graph/GraphDBAccess.java:816
↓ 1 callersMethodlogException
Log the exception details to appropriate log @param info The prefix to add to the exception message @param exception The details of the error that wa
src/main/java/graph/RestExceptionHandler.java:74
↓ 1 callersMethodlogInfo
Log the error details to appropriate log @param info The error details
src/main/java/graph/RestExceptionHandler.java:84
↓ 1 callersFunctionma
(a)
src/main/resources/static/lib/js/jquery.min.js:2
↓ 1 callersFunctionnb
(a,b,c)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersFunctionpb
(a,b)
src/main/resources/static/lib/js/jquery.min.js:4
↓ 1 callersMethodprocessBlankNodeProperty
Processes a blank node which could be a reference to a parseType="Resource" individual, a container, a collection/list, or a datatype subclass. Determ
src/main/java/graph/GraphDBAccess.java:1296
↓ 1 callersMethodprocessClassHierarchy
Create a class hierarchy graph (classes, superclasses, enumerations, equivalences, ...) in GraphML. @param requestModel GraphRequestModel defining v
src/main/java/graph/graphmloutputs/ClassesGraphCreation.java:59
↓ 1 callersFunctionprocessCustomization
(graphType, file)
src/main/resources/static/js/main.js:270
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