Compress len zeros to output. Return -1 on error, 0 on success. */

-- see zlib.h -- */

* For creating existing mFILE pointers directly from memory buffers. */

next batch

grab the next batch of reads into a host memory buffer

run the pipeline to completion

Compares two suffixes. */

return the amount of used device memory

* Returns a portion of a reference sequence from start to end inclusive. * The returned pointer is owned by either the cram_file fd or by the * inte

create the thread

--------------------------------Deque Size-----------------------------------| @{ @brief Returns true if the priority deque is empty, false if it is n

convert a 4-bit DNA symbol to its ASCII character

join the thread

sample utilization

sum a uint4 and a uchar4 packed into a uint32.

Add a new region into a list sorted by start,end. On input the coordinates are 1-based, stored 0-based, inclusive.

convert an ASCII DNA representation to its 4-bit symbol

* Reads a container header. * * Returns cram_container on success * NULL on failure or no container left (fd->err == 0). */