begin iterator

minimum of two floats

maximum of two floats

return the plain view of a DCS

add a read to this batch

@brief Returns a const iterator past the end of the sequence.

-------------------------------Random Access---------------------------------| @{ @brief Returns a const iterator at the beginning of the sequence.

! @abstract Read one character from the stream @return The character read, or EOF on end-of-file or error */

return the current size

@brief Returns the number of elements in the priority deque.

* As above, but decoding from memory */

* Stores a value to memory in ITF-8 format. * * Returns the number of bytes required to store the number. * This is a maximum of 5 bytes. */

return a view of the queues

* Frees a CRAM block, deallocating internal data too. */

* Allocates a new cram_block structure with a specified content_type and * id. * * Returns block pointer on success * NULL on failure */

int32 popcount

return the c'th component of a by value

return the plain view of a SSA_value_multiple

* Computes entropy from integer frequencies for various encoding methods and * picks the best encoding. * * FIXME: we could reuse some of the code

* vlen: 27/10/95 written by James Bonfield, jkb@mrc-lmb.cam.ac.uk * * Given sprintf style of arguments this routine returns the maximum * size of b

extract alignment data for a given mate note that the mates can be different for the cigar, since mate 1 is always the anchor mate for cigars

* Pushes a value in ITF8 format onto the end of a block. * This shouldn't be used for high-volume data as it is not the fastest * method. * * Retu