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Functions168 in github.com/MontaEllis/Pytorch-Medical-Segmentation

↓ 10 callersMethod__init__
(self, in_features, act_layer=nn.GELU, drop=0.)
models/three_d/unetr.py:103
↓ 10 callersFunctionupsize
(x,scale_factor=2)
models/two_d/unetpp.py:10
↓ 9 callersMethod_block
(in_channels, features, name)
models/three_d/unet3d.py:73
↓ 7 callersFunctionELUCons
(elu, nchan)
models/three_d/vnet3d.py:14
↓ 5 callersMethod__init__
(self, in_ch, out_ch, bilinear=True)
models/two_d/unet.py:52
↓ 5 callersMethod__init__
(self, in_class,block, layers=(3, 4, 23, 3))
models/two_d/pspnet.py:87
↓ 5 callersMethod__init__
(self, elu=True, in_channels=1, classes=1)
models/three_d/vnet3d.py:129
↓ 4 callersMethod__init__
(self, in_input = 3,classes=2, P1=2, P2=3, P3=8, P4=6, aux=False)
models/two_d/miniseg.py:98
↓ 4 callersMethod__init__
(self, num_input_features, growth_rate, bn_size, drop_rate=0.2)
models/three_d/densevoxelnet3d.py:18
↓ 4 callersMethod_make_layer
(self, block, planes, blocks, stride=1, dilation=1, multi_grid=1, bn_momentum=0.0003)
models/two_d/deeplab.py:83
↓ 4 callersMethod_make_layer
(self, block, planes, blocks, stride=1, dilation=1)
models/two_d/pspnet.py:108
↓ 4 callersMethodconv_norm_lrelu
(self, feat_in, feat_out)
models/three_d/residual_unet3d.py:82
↓ 4 callersMethodnorm_lrelu_conv
(self, feat_in, feat_out)
models/three_d/residual_unet3d.py:88
↓ 4 callersMethodnorm_lrelu_upscale_conv_norm_lrelu
(self, feat_in, feat_out)
models/three_d/residual_unet3d.py:99
↓ 3 callersMethod__init__
(self, in_channels, out_channels, dilation_rates=(12, 24, 3
models/two_d/deeplab.py:128
↓ 3 callersMethod__init__
(self, num_input_features, growth_rate, bn_size, drop_rate)
models/three_d/densenet3d.py:8
↓ 3 callersFunctionsplit
(x)
models/two_d/miniseg.py:89
↓ 3 callersMethodtranspose_for_scores
(self, x)
models/three_d/unetr.py:73
↓ 2 callersMethod__init__
(self, n_classes)
loss_function.py:102
↓ 2 callersMethod__init__
(self, in_planes, out_planes, kernel_size, stride, padding=0)
models/two_d/unetpp.py:65
↓ 2 callersFunction_make_nConv
(nchan, depth, elu)
models/three_d/vnet3d.py:34
↓ 2 callersFunctionconv3x3
(in_planes, out_planes, stride=1, dilation=1)
models/two_d/pspnet.py:10
↓ 2 callersFunctionparse_training_args
Parse commandline arguments.
main.py:40
↓ 1 callersMethod__init__
(self, pad, mode)
utils/convolution.py:79
↓ 1 callersMethod__init__
( self, in_channels, out_channels, dimensions=None,
models/two_d/highresnet.py:14
↓ 1 callersMethod__init__
( self, in_channels, out_channels, dimensions=None,
models/three_d/highresnet.py:14
↓ 1 callersMethod_dice_loss
(self, score, target)
loss_function.py:114
↓ 1 callersMethod_global_pooling
(self, x)
models/two_d/deeplab.py:181
↓ 1 callersMethod_initialize_weights
(self)
models/two_d/fcn.py:95
↓ 1 callersMethod_initialize_weights
(self)
models/three_d/fcn3d.py:93
↓ 1 callersMethod_make_stage
(self, features, size)
models/two_d/pspnet.py:147
↓ 1 callersMethod_one_hot_encoder
(self, input_tensor)
loss_function.py:106
↓ 1 callersFunctiondo_subject
(image_paths, label_paths)
metrics.py:32
↓ 1 callersFunctionget_resnet101
(in_class, dilation=[1,1,1,1], bn_momentum=0.0003, is_fpn=False)
models/two_d/deeplab.py:121
↓ 1 callersFunctionget_upsampling_weight
Make a 2D bilinear kernel suitable for upsampling
models/two_d/fcn.py:17
↓ 1 callersMethodget_upsampling_weight
Make a 2D bilinear kernel suitable for upsampling
models/three_d/fcn3d.py:78
↓ 1 callersMethodlrelu_conv
(self, feat_in, feat_out)
models/three_d/residual_unet3d.py:94
↓ 1 callersFunctionmetric
(gt,pred)
utils/metric.py:7
↓ 1 callersFunctiontest
()
main.py:399
↓ 1 callersFunctiontrain
()
main.py:75
↓ 1 callersMethodtransform
(self)
data_function.py:111
Method__init__
(self)
loss_function.py:18
Method__init__
(self, smooth=1, p=2, reduction='mean')
loss_function.py:76
Method__init__
(self, images_dir, labels_dir)
data_function.py:40
Method__init__
(self, images_dir, labels_dir)
data_function.py:161
Method__init__
( self, in_channels, out_channels, dilation, dimen
utils/dilation.py:6
Method__init__
( self, in_channels, out_channels, dilation, dimen
utils/convolution.py:13
Method__init__
( self, in_channels, out_channels, num_layers, dil
utils/residual.py:12
Method__init__
(self, in_ch, out_ch)
models/two_d/unet.py:13
Method__init__
(self, in_ch, out_ch)
models/two_d/unet.py:29
Method__init__
(self, in_ch, out_ch)
models/two_d/unet.py:39
Method__init__
(self, in_ch, out_ch)
models/two_d/unet.py:76
Method__init__
(self, in_channels, classes)
models/two_d/unet.py:86
Method__init__
(self,input_nbr,label_nbr)
models/two_d/segnet.py:8
Method__init__
(self, in_channels=512, out_channels=256, kernel_size=3,
models/two_d/unetpp.py:16
Method__init__
(self, num_channels=1, num_class=1, is_deconv=False,
models/two_d/unetpp.py:85
Method__init__
(self, in_planes, out_planes, stride=1)
models/two_d/miniseg.py:8
Method__init__
(self, in_planes, out_planes)
models/two_d/miniseg.py:20
Method__init__
(self, in_planes, out_planes, stride=1)
models/two_d/miniseg.py:37
Method__init__
(self, in_planes, out_planes, stride=2)
models/two_d/miniseg.py:76
Method__init__
(self, in_class = 1,n_class=1)
models/two_d/fcn.py:35
Method__init__
(self, inplanes, planes, stride=1, dilation=1, downsample=None, fist_dilation=1, multi_grid=1, bn_momentum=0.0
models/two_d/deeplab.py:17
Method__init__
(self, in_class, block, layers, dilation=[1,1,1,1], bn_momentum=0.0003, is_fpn=False)
models/two_d/deeplab.py:62
Method__init__
(self, in_class, class_num, bn_momentum=0.01)
models/two_d/deeplab.py:201
Method__init__
(self, *args, **kwargs)
models/two_d/highresnet.py:141
Method__init__
(self, inplanes, planes, stride=1, downsample=None, dilation=1)
models/two_d/pspnet.py:18
Method__init__
(self, inplanes, planes, stride=1, downsample=None, dilation=1)
models/two_d/pspnet.py:50
Method__init__
(self, features, out_features=1024, sizes=(1, 2, 3, 6))
models/two_d/pspnet.py:140
Method__init__
(self, in_channels, out_channels)
models/two_d/pspnet.py:160
Method__init__
(self, in_class=1,n_classes=1, sizes=(1, 2, 3, 6), psp_size=512, deep_features_size=1024, backend='resnet34',
models/two_d/pspnet.py:175
Method__init__
(self, in_planes, out_planes)
models/three_d/unetr.py:9
Method__init__
(self, in_planes, out_planes, kernel_size)
models/three_d/unetr.py:18
Method__init__
(self, in_planes, out_planes, kernel_size=3)
models/three_d/unetr.py:28
Method__init__
(self, in_planes, out_planes, kernel_size=3)
models/three_d/unetr.py:41
Method__init__
(self, num_heads, embed_dim, dropout)
models/three_d/unetr.py:55
Method__init__
(self, d_model=786, d_ff=2048, dropout=0.1)
models/three_d/unetr.py:117
Method__init__
(self, input_dim, embed_dim, cube_size, patch_size, dropout)
models/three_d/unetr.py:129
Method__init__
(self, embed_dim, num_heads, dropout, cube_size, patch_size)
models/three_d/unetr.py:149
Method__init__
(self, input_dim, embed_dim, cube_size, patch_size, num_heads, num_layers, dropout, extract_layers)
models/three_d/unetr.py:172
Method__init__
(self, img_shape=(128, 128, 128), input_dim=4, output_dim=3, embed_dim=768, patch_size=16, num_heads=12, dropo
models/three_d/unetr.py:195
Method__init__
(self, in_channels, n_classes, base_n_filter=8)
models/three_d/residual_unet3d.py:11
Method__init__
Implementations based on the Unet3D paper: https://arxiv.org/abs/1606.06650
models/three_d/unet3d.py:9
Method__init__
(self, nchan, elu)
models/three_d/vnet3d.py:22
Method__init__
(self, in_channels, elu)
models/three_d/vnet3d.py:42
Method__init__
(self, inChans, nConvs, elu, dropout=False)
models/three_d/vnet3d.py:62
Method__init__
(self, inChans, outChans, nConvs, elu, dropout=False)
models/three_d/vnet3d.py:84
Method__init__
(self, in_channels, classes, elu)
models/three_d/vnet3d.py:108
Method__init__
(self, num_layers, num_input_features, bn_size, growth_rate, drop_rate)
models/three_d/densenet3d.py:30
Method__init__
(self, num_input_features, num_output_features)
models/three_d/densenet3d.py:38
Method__init__
(self, in_channels=1, classes=1, growth_rate=16, block_config=(4, 4, 4, 4), num_init_features=32, drop_rate=0.
models/three_d/densenet3d.py:65
Method__init__
(self, *args, **kwargs)
models/three_d/highresnet.py:141
Method__init__
(self, num_layers, num_input_features, bn_size, growth_rate, drop_rate=0.2)
models/three_d/densevoxelnet3d.py:42
Method__init__
(self, num_input_features, num_output_features)
models/three_d/densevoxelnet3d.py:50
Method__init__
(self, input_features, out_features)
models/three_d/densevoxelnet3d.py:72
Method__init__
(self, in_channels=1, classes=1)
models/three_d/densevoxelnet3d.py:96
Method__init__
(self, in_channels =1,n_class = 1)
models/three_d/fcn3d.py:9
Method_sum_each
(self, x, y)
models/two_d/deeplab.py:32
Functioncross_entropy_3D
(input, target, weight=None, size_average=True)
loss_function.py:6
Methodforward
(self, model_output, targets)
loss_function.py:23
Methodforward
(self, predict, target)
loss_function.py:82
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