* A function to generate a pixel value for 0-1 location on screen depending on screen width * @param {number} width 0-1

* Adds a new attachment point to this atom * @param {boolean} type - The type of the IO (input or output) * @param {string} name - The name

* A function to generate a pixel value for 0-1 location on screen depending on screen height * @param {number} width 0-1

* Find the value of an input for with a given name. * @param {string} ioName - The name of the target attachment point.

* Applies each of the passed values to this as this.x * @param {object} values - A list of values to set

* Set an alert to display next to the atom. * @param {string} message - The message to display.

* Calls a worker thread to compute the atom's value.

* Reads and returns the current value of the ap.

* Creates an editable HTML item to set the value of an object element. Used in the sidebar. * @param {object} list - The HTML object to attach th

* Creates button. Used in the sidebar. * @param {object} list - The HTML object to attach the new item to. * @param {object} parent - The pa

* A function to generate a unique ID value. Currently uses random which does not gurintee that it will be unique.

* Computes the distance between two points on a plane. This is a duplicate of the one in utils which should probably be deleted. * @param {number

* A function to generate a 0-1 value from pixels for location on screen depending on screen height * @param {number} width 0-1

* A function to generate a 0-1 value from pixels for location on screen depending on screen width * @param {number} width 0-1

* Places a new atom inside the molecule * @param {object} newAtomObj - An object defining the new atom to be placed * @param {array} molecul

* Handle a background click (a click which doesn't land on one of the contained molecules) by deselected everything and displaying a 3D rendering of t

* Clears the alert message attached to this atom.

* Set's the output value and shows the atom output on the 3D view.

* Runs to create submenus from Global Variables atomCategories. Populates menu objects * @param {object} group - Name of the category to find app

* Re excecutes configure function for nesting if values are updated by user

* Deletes the connector by calling its attachmentPoints to tell them to delete their references to this connector.

* Update values for config(). Called when the values on sidebar have been edited.

* Sets the current value of the ap. Force forces an update even if the value hasn't changed.

* A function which reads from a path and displays the geometry it contains * @param {string} The path to read from

* Trigger the process to evaluate the current individual

* Walks through each of the atoms in this molecule and begins Propagation from them if they have no inputs to wait for

* Creates button. Used in the sidebar. * @param {object} list - The HTML object to attach the new item to. * @param {string} buttonText - Th

* Load the children of this from a JSON representation * @param {object} json - A json representation of the molecule * @param {object} valu

* Compute the distance between two points on a plane. * @param {number} x1 - The x cordinate of the first point. * @param {number} y1 - The y cordin

* Reads the path of this molecule's output atom

* Removes an attachment point from an atom. * @param {boolean} type - The type of the IO (input or output). * @param {string} name - The nam

* Updates the side bar to display options like 'go to parent' and 'load a different project'. What is displayed depends on if this atom is the top lev

* Set the value to be the BOMitem

* Clears the drawing of box when clickUp and updates values for atom selection

* Loads a project into this GitHub molecule from github based on the passed github ID. This function is async and execution time depends on project co

* Called when this molecules value changes

* Returns a random integer within a range. * @param {number} min - The minimum possible value. * @param {number} max - The maximum possible value.

* Save the input code to be loaded next time

* Grab the code as a text string and execute it.

* Sets the parent molecule output to wait on coming information

* Add and remove inputs as needed from the atom

* Runs when a search value is entered (after return) * @param {object} item - What is being added to the list. * @param {object} owned - Doe

* Set the atom's response to a mouse click. This usually means selecting the atom and displaying it's contents in 3D * @param {number} x - The X

* Closes main menu on background click or on button click if open

* Pushes serialized atoms into array if selected

* Creates dropdown with multiple options to select. Used in the sidebar. * @param {object} list - The HTML object to attach the new item to.

* Creates an non-editable HTML item to set the value of an object element. Used in the sidebar. * @param {object} list - The HTML object to attac

* Delete a target connector which is passed in. The default option is to delete all of the connectors.

* Remove the input from the parent molecule, then delete the atom normally.

* Delete this atom. Silent prevents it from telling its neighbors

* Displays the atom in 3D and sets the output.

* The function which is called when you press the download button.

* Called to trigger editing the code atom

* Evaluate the equation

* Generates the path for this atom from it's location in the graph

* Initialized the sidebar with a title and create the HTML object.

* Called by double clicks

* Called by mouse down

* Called by mouse moves

* Called by mouse up

* Handles the window's resize behavior when the browser size changes.

* This function reads the string of inputs the user specifies and adds them to the atom.

* Pass the value of the attached output to the attached input

* Called when this molecules value changes