Functions — github.com/LouisFoucard/DSB17_3d_lung_nodule

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Functions84 in github.com/LouisFoucard/DSB17_3d_lung_nodule_classifier

⨍ Functions 84 ◇ Types & classes 13

↓ 12 callersMethodrandom_transform

(self, x)

code/preprocessing.py:389

↓ 8 callersMethodstandardize

(self, x)

code/preprocessing.py:343

↓ 5 callersMethod__init__

(self, N, batch_size, shuffle, seed)

code/preprocessing.py:524

↓ 5 callersFunctionapply_transform

(x, transform_matrix, channel_index=0, fill_mode='nearest', cval=0.)

code/preprocessing.py:103

↓ 5 callersFunctionapply_transform

(x, transform_matrix, channel_index=0, fill_mode='nearest', cval=0.)

code/utils.py:139

↓ 4 callersFunctiontransform_matrix_offset_center

(matrix, x, y)

code/preprocessing.py:94

↓ 4 callersFunctiontransform_matrix_offset_center

(matrix, x, y)

code/utils.py:130

↓ 3 callersMethod__init__

(self, N, batch_size, shuffle, seed)

code/utils.py:523

↓ 3 callersFunctionflip_axis

(x, axis)

code/preprocessing.py:114

↓ 3 callersMethodrandom_transform

(self, x)

code/utils.py:394

↓ 2 callersFunctionarray_to_img

(x, dim_ordering='default', scale=True)

code/preprocessing.py:121

↓ 2 callersFunctionarray_to_img

(x, dim_ordering='default', scale=True)

code/utils.py:157

↓ 2 callersFunctionflip_axis

(x, axis)

code/utils.py:150

↓ 2 callersMethodflow_from_filenames_3d_class

(self, X_filenames, Y_classes=None, batch_size=32,crop=(None, None), two_D=False, return_mask=False, shuffle=T

code/preprocessing.py:303

↓ 2 callersMethodnext

(self)

code/utils.py:721

↓ 2 callersFunctionresample

(image, scan, new_spacing=None, crop=(0, 0))

code/luna_preprocess_3d.py:106

↓ 2 callersMethodstandardize

(self, x)

code/utils.py:354

↓ 2 callersMethodupload

(source_path, chunk_size=50000000)

code/utils.py:844

↓ 1 callersMethod_flow_index

(self, N, batch_size=32, shuffle=False, seed=None)

code/preprocessing.py:537

↓ 1 callersMethod_flow_index

(self, N, batch_size=32, shuffle=False, seed=None)

code/utils.py:535

↓ 1 callersFunctionget_masks

(scans)

code/luna_preprocess_3d.py:97

↓ 1 callersFunctionget_pixels_hu

(scans)

code/luna_preprocess_3d.py:81

↓ 1 callersFunctionget_simp3d

(lr)

code/luna_train_3d_convnet.py:25

↓ 1 callersFunctionimg_to_array

(img, dim_ordering='default')

code/preprocessing.py:154

↓ 1 callersFunctionimg_to_array

(img, dim_ordering='default')

code/utils.py:190

↓ 1 callersFunctionload_img

Load an image into PIL format. # Arguments path: path to image file grayscale: boolean target_size: None (default to orig

code/preprocessing.py:176

↓ 1 callersFunctionload_img

Load an image into PIL format. # Arguments path: path to image file grayscale: boolean target_size: None (default to orig

code/utils.py:212

↓ 1 callersFunctionload_scan

(path, df_node)

code/luna_preprocess_3d.py:126

↓ 1 callersFunctionmain

(n_folders)

code/luna_preprocess_3d.py:176

↓ 1 callersFunctionmain

(arguments)

code/luna_train_3d_convnet.py:62

↓ 1 callersFunctionmake_mask

Center : centers of circles px -- list of coordinates x,y,z diam : diameters of circles px -- diameter widthXheight : pixel dim of image

code/luna_preprocess_3d.py:29

↓ 1 callersFunctionmatrix2int16

matrix must be a numpy array NXN Returns uint16 version

code/luna_preprocess_3d.py:17

↓ 1 callersMethodnext

(self)

code/preprocessing.py:613

↓ 1 callersFunctionrandom_channel_shift

(x, intensity, channel_index=0)

code/preprocessing.py:84

↓ 1 callersFunctionrandom_channel_shift

(x, intensity, channel_index=0)

code/utils.py:120

↓ 1 callersMethodreset

(self)

code/preprocessing.py:534

↓ 1 callersMethodreset

(self)

code/utils.py:532

Method__init__

(self, featurewise_center=False, samplewise_center=False, f

code/preprocessing.py:243

Method__init__

(self, X_filenames, Y_filenames, image_data_generator, return_mask=False, batch_size=32, crop

code/preprocessing.py:571

Method__init__

(self, X_filenames, Y_classes, image_data_generator, batch_size=32, crop=(None, None), shuffl

code/preprocessing.py:698

Method__init__

(self, X_filenames, Y_filenames, image_data_generator, two_D=False, return_mask=False, batch_

code/preprocessing.py:784

Method__init__

(self, X, y, image_data_generator, batch_size=32, shuffle=False, seed=None,

code/preprocessing.py:962

Method__init__

(self, directory, image_data_generator, target_size=(256, 256), color_mode='rgb',

code/preprocessing.py:1026

Method__init__

(self, spacing, pixel_array, direction, mask_array=None)

code/luna_preprocess_3d.py:71

Method__init__

(self, featurewise_center=False, samplewise_center=False, f

code/utils.py:279

Method__init__

(self, X, y, image_data_generator, batch_size=32, shuffle=False, seed=None,

code/utils.py:568

Method__init__

(self, directory, image_data_generator, target_size=(256, 256), color_mode='rgb',

code/utils.py:632

Method__init__

(self, filepath, monitor='val_loss', verbose=0, save_best_only=False, save_weights_only=False

code/utils.py:764

Method__iter__

(self)

code/preprocessing.py:560

(self, *args, **kwargs)

code/preprocessing.py:565

Method__next__

(self, *args, **kwargs)

code/utils.py:562

Method_recursive_list

(subpath)

code/preprocessing.py:1078

Method_recursive_list

(subpath)

code/utils.py:684

Methodfit

Required for featurewise_center, featurewise_std_normalization and zca_whitening. # Arguments X: Numpy array, the data to

code/preprocessing.py:460

Methodfit

Required for featurewise_center, featurewise_std_normalization and zca_whitening. # Arguments X: Numpy array, the data to

code/utils.py:459

Methodflow

(self, X, y=None, batch_size=32, shuffle=True, seed=None, save_to_dir=None, save_prefix='', save_

code/preprocessing.py:319

Methodflow

(self, X, y=None, batch_size=32, shuffle=True, seed=None, save_to_dir=None, save_prefix='', save_

code/utils.py:330

Methodflow_from_directory

(self, directory, target_size=(256, 256), color_mode='rgb',

code/preprocessing.py:327

Methodflow_from_directory

(self, directory, target_size=(256, 256), color_mode='rgb',

code/utils.py:338

Methodflow_from_filenames

(self, X_filenames, Y_filenames=None, batch_size=32,crop=(None, None), two_D=False, return_mask=False, shuffle

code/preprocessing.py:295

Methodflow_from_filenames_v2

(self, X_filenames, Y_filenames=None, batch_size=32,crop=(None, None), return_m

code/preprocessing.py:311

Functionget_filename

(case)

code/luna_preprocess_3d.py:188

Functionget_simp3d

(lr=4e-5)

code/threeD_convnet.py:14

Functionlist_pictures

(directory, ext='jpg|jpeg|bmp|png')

code/preprocessing.py:199

Functionlist_pictures

(directory, ext='jpg|jpeg|bmp|png')

code/utils.py:235

Methodnext

(self)

code/preprocessing.py:732

Methodnext

(self)

code/preprocessing.py:827

Methodnext

(self)

code/preprocessing.py:996

Methodnext

(self)

code/preprocessing.py:1115

(self, epoch, logs={})

code/utils.py:797

Functionrandom_barrel_transform

(x, intensity)

code/preprocessing.py:79

Functionrandom_barrel_transform

(x, intensity)

code/utils.py:115

Functionrandom_rotation

(x, rg, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/preprocessing.py:19

Functionrandom_rotation

(x, rg, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/utils.py:55

Functionrandom_shear

(x, intensity, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/preprocessing.py:46

Functionrandom_shear

(x, intensity, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/utils.py:82

Functionrandom_shift

(x, wrg, hrg, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/preprocessing.py:32

Functionrandom_shift

(x, wrg, hrg, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/utils.py:68

Functionrandom_zoom

(x, zoom_range, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/preprocessing.py:59

Functionrandom_zoom

(x, zoom_range, row_index=1, col_index=2, channel_index=0, fill_mode='nearest', cval=0.)

code/utils.py:95

Functions3_upload_big

(source_path, chunk_size=50000000)

code/utils.py:21

Functions3_upload_small

(filename)

code/utils.py:43