Functions — github.com/KlugerLab/FIt-SNE

CodeHub MCPcopy Create free account

hub / github.com/KlugerLab/FIt-SNE / functions

Functions179 in github.com/KlugerLab/FIt-SNE

⨍ Functions 179◇ Types & classes 30

↓ 11 callersFunctiondot

src/annoylib.h:132

↓ 7 callersFunction__map_mman_error

src/winlibs/mman.c:12

↓ 7 callersMethodindex

src/vptree.h:90

↓ 5 callersFunctionmmap

src/winlibs/mman.c:58

↓ 4 callersMethoddisplay

src/progress_bar/ProgressBar.hpp:25

↓ 4 callersMethodflip

src/kissrandom.h:47

↓ 4 callersMethodgetWidth

src/sptree.cpp:68

↓ 4 callersFunctionsign

↓ 3 callersFunctionftruncate

src/winlibs/mman.c:182

↓ 3 callersFunctionhsum256_ps_avx

Horizontal single sum of 256bit vector.

src/annoylib.h:165

↓ 3 callersFunctioninterpolate

src/nbodyfft.cpp:310

↓ 3 callersFunctionmunmap

src/winlibs/mman.c:129

↓ 3 callersFunctionn_body_fft_2d

src/nbodyfft.cpp:73

↓ 3 callersFunctionnbodyfft

src/nbodyfft.cpp:339

↓ 3 callersFunctionprecompute

src/nbodyfft.cpp:251

↓ 3 callersFunctionprecompute_2d

src/nbodyfft.cpp:9

↓ 2 callersFunction__map_mmap_prot_page

src/winlibs/mman.c:20

↓ 2 callersMethodcomputeNonEdgeForces

Compute non-edge forces using Barnes-Hut algorithm

src/sptree.cpp:326

↓ 2 callersMethodcontainsPoint

Checks whether a point lies in a cell

src/sptree.cpp:81

↓ 2 callersMethoddimensionality

src/vptree.h:92

↓ 2 callersMethodgetCorner

src/sptree.cpp:64

↓ 2 callersMethodget_nns_by_item

src/annoylib.h:1127

↓ 2 callersFunctionget_norm

src/annoylib.h:322

↓ 2 callersMethodinsert

Insert a point into the SPTree

src/sptree.cpp:197

↓ 2 callersFunctionremap_memory

src/annoylib.h:110

↓ 2 callersMethodx

src/vptree.h:94

↓ 1 callersFunction__map_mmap_prot_file

src/winlibs/mman.c:41

↓ 1 callersMethodadd_item

src/annoylib.h:851

↓ 1 callersMethodbuild

src/annoylib.h:910

↓ 1 callersMethodcomputeEdgeForces

Computes edge forces

src/sptree.cpp:358

↓ 1 callersMethodcreate

Function to create a new VpTree from data

src/vptree.h:123

↓ 1 callersFunctioneuclidean_distance

src/annoylib.h:151

↓ 1 callersMethodload_data

Function that loads data from a t-SNE file Note: this function does a malloc that should be freed elsewhere

src/tsne.cpp:1894

↓ 1 callersFunctionmanhattan_distance

src/annoylib.h:143

↓ 1 callersFunctionprint_progress

Helper function for printing Y at each iteration. Useful for debugging

src/tsne.cpp:100

↓ 1 callersMethodrun

src/tsne.cpp:118

↓ 1 callersMethodsave_data

Function that saves map to a t-SNE file

src/tsne.cpp:2023

↓ 1 callersMethodsearch

Function that uses the tree to find the k nearest neighbors of target

src/vptree.h:130

↓ 1 callersMethodsetCorner

src/sptree.cpp:72

↓ 1 callersMethodsetWidth

src/sptree.cpp:76

↓ 1 callersMethodset_seed

src/annoylib.h:1155

MethodAnnoyIndex

src/annoylib.h:836

Constructs cell

src/sptree.cpp:44

MethodDataPoint

src/vptree.h:55

MethodDistanceComparator

src/vptree.h:192

src/vptree.h:177

MethodKiss32Random

seed must be != 0

src/kissrandom.h:24

MethodKiss64Random

seed must be != 0

src/kissrandom.h:68

src/vptree.h:165

MethodProgressBar

src/progress_bar/ProgressBar.hpp:18

Default constructor for SPTree -- build tree, too!

src/sptree.cpp:91

Default constructor

src/vptree.h:115

Method_allocate_size

src/annoylib.h:1160

src/annoylib.h:1180

Method_get_all_nns

src/annoylib.h:1268

Method_make_tree

src/annoylib.h:1184

Function_mprotect

src/winlibs/mman.c:139

Methodadd_item_impl

src/annoylib.h:856

MethodbuildFromPoints

Function that (recursively) fills the tree

src/vptree.h:200

Methodcole_popcount

src/annoylib.h:615

MethodcomputeExactGradient

Compute the exact gradient of the t-SNE cost function

src/tsne.cpp:1231

MethodcomputeExactGradientTest

src/tsne.cpp:1171

MethodcomputeFftGradient

Compute the gradient of the t-SNE cost function using the FFT interpolation based approximation

src/tsne.cpp:1026

MethodcomputeFftGradientOneD

Compute the gradient of the t-SNE cost function using the FFT interpolation based approximation for for one dimensional Ys

src/tsne.cpp:757

MethodcomputeFftGradientOneDVariableDf

Compute the gradient of the t-SNE cost function using the FFT interpolation based approximation for for one dimensional Ys

src/tsne.cpp:646

MethodcomputeFftGradientVariableDf

Compute the gradient of the t-SNE cost function using the FFT interpolation based approximation, with variable degree of freedom df

src/tsne.cpp:859

MethodcomputeGaussianPerplexity

Compute input similarities using exact algorithm

src/tsne.cpp:1503

MethodcomputeGradient

Compute gradient of the t-SNE cost function (using Barnes-Hut algorithm)

src/tsne.cpp:596

MethodcomputeSquaredEuclideanDistance

Compute squared Euclidean distance matrix

src/tsne.cpp:1831

Methodcopy_node

src/annoylib.h:385

Methodcopy_node

src/annoylib.h:513

Methodcreate_split

src/annoylib.h:448

Methodcreate_split

src/annoylib.h:519

Methodcreate_split

src/annoylib.h:644

Methodcreate_split

src/annoylib.h:730

Methodcreate_split

src/annoylib.h:761

src/annoylib.h:424

src/annoylib.h:499

src/annoylib.h:626

src/annoylib.h:726

src/annoylib.h:757

Methoddistances2similarities

Converts an array of [squared] Euclidean distances into similarities aka affinities using a specified perplexity value (or a specified kernel width)

src/tsne.cpp:1393

src/progress_bar/ProgressBar.hpp:45

Functiondot<float>

src/annoylib.h:173

Functioneuclidean_distance

src/vptree.h:97

Functioneuclidean_distance<float>

src/annoylib.h:221

MethodevaluateError

Evaluate t-SNE cost function (exactly)

src/tsne.cpp:1285

MethodevaluateErrorFft

Evaluate t-SNE cost function (approximately) using FFT

src/tsne.cpp:1328

Functionfast_tsne

Run t-SNE. This implementation supports exact t-SNE, Barnes-Hut t-SNE and FFT-accelerated interpolation-based t-SNE (FIt-SNE). This is a Python

fast_tsne.py:19

Build SPTree on dataset

src/sptree.cpp:278

src/kissrandom.h:92

Functiongeneral_kernel

src/tsne.cpp:73

Functiongeneral_kernel_2d

src/tsne.cpp:88

MethodgetAllIndices

Build a list of all indices in SPTree

src/sptree.cpp:298

src/sptree.cpp:317

MethodgetParent

Get the parent of the current tree

src/sptree.cpp:191

Methodget_distance

src/annoylib.h:1123

src/annoylib.h:847

src/annoylib.h:1149

Methodget_n_items

src/annoylib.h:1137

next →1–100 of 179, ranked by callers