(self, ips, imgs, para = None)
| 24 | return True |
| 25 | #process |
| 26 | def run(self, ips, imgs, para = None): |
| 27 | name = para['name'] |
| 28 | print('name------------------', name) |
| 29 | if ips.get_nslices()==1 or self.para['stack']==False: |
| 30 | if ips.roi == None: |
| 31 | img = ips.img.copy() |
| 32 | ipsd = ImagePlus([img], name) |
| 33 | ipsd.backimg = ips.backimg |
| 34 | else: |
| 35 | img = ips.get_subimg().copy() |
| 36 | ipsd = ImagePlus([img], name) |
| 37 | box = ips.roi.get_box() |
| 38 | ipsd.roi = ips.roi.affine(np.eye(2), (-box[0], -box[1])) |
| 39 | if not ips.backimg is None: |
| 40 | sr, sc = ips.get_rect() |
| 41 | ipsd.backimg = ips.backimg[sr, sc] |
| 42 | elif ips.get_nslices()>1 and self.para['stack']: |
| 43 | if ips.roi == None: |
| 44 | if ips.is3d:imgs=imgs.copy() |
| 45 | else:imgs = [i.copy() for i in imgs] |
| 46 | backimg = ips.backimg |
| 47 | else: |
| 48 | sc, sr = ips.get_rect() |
| 49 | if ips.is3d: imgs=imgs[:, sc, sr].copy() |
| 50 | else: imgs = [i[sc,sr].copy() for i in imgs] |
| 51 | if not ips.backimg is None: |
| 52 | backimg = ips.backimg[sr, sr] |
| 53 | ipsd = ImagePlus(imgs, name) |
| 54 | if ips.roi != None: |
| 55 | ipsd.roi = ips.roi.affine(np.eye(2), (-sr.start, -sc.start)) |
| 56 | if not ips.backimg is None: ipsd.backimg = backimg |
| 57 | ipsd.backmode = ips.backmode |
| 58 | IPy.show_ips(ipsd) |
| 59 | |
| 60 | class Rename(Simple): |
| 61 | title = 'Rename' |
nothing calls this directly
no test coverage detected