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github.com/HiLab-git/SSL4MIS
/ types & classes
Types & classes
123 in github.com/HiLab-git/SSL4MIS
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Functions
575
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Types & classes
123
↓ 28 callers
Class
BaseDataSets
code/dataloaders/dataset.py:20
↓ 23 callers
Class
RegularBottleneck
Regular bottlenecks are the main building block of ENet. Main branch: 1. Shortcut connection. Extension branch: 1. 1x1 convolution whi
code/networks/enet.py:71
↓ 20 callers
Class
UnetConv3
code/networks/utils.py:99
↓ 13 callers
Class
TwoStreamBatchSampler
Iterate two sets of indices An 'epoch' is one iteration through the primary indices. During the epoch, the secondary indices are iterated thr
code/dataloaders/dataset.py:206
↓ 12 callers
Class
RandomGenerator
code/dataloaders/dataset.py:147
↓ 12 callers
Class
UnetUp3_CT
code/networks/utils.py:260
↓ 12 callers
Class
UpBlock
Upssampling followed by ConvBlock
code/networks/unet.py:65
↓ 9 callers
Class
BraTS2019
BraTS2019 Dataset
code/dataloaders/brats2019.py:11
↓ 9 callers
Class
ConvBlock
code/networks/vnet.py:5
↓ 9 callers
Class
RandomCrop
Crop randomly the image in a sample Args: output_size (int): Desired output size
code/dataloaders/brats2019.py:80
↓ 9 callers
Class
RandomRotFlip
Crop randomly flip the dataset in a sample Args: output_size (int): Desired output size
code/dataloaders/brats2019.py:131
↓ 9 callers
Class
ToTensor
Convert ndarrays in sample to Tensors.
code/dataloaders/brats2019.py:177
↓ 8 callers
Class
TwoStreamBatchSampler
Iterate two sets of indices An 'epoch' is one iteration through the primary indices. During the epoch, the secondary indices are iterated thr
code/dataloaders/brats2019.py:191
↓ 6 callers
Class
Encoder
code/networks/unet.py:89
↓ 6 callers
Class
UnetDsv3
code/networks/utils.py:455
↓ 6 callers
Class
UnetSkipConnectionBlock
code/networks/networks_other.py:427
↓ 6 callers
Class
VoxRex
code/networks/VoxResNet.py:26
↓ 5 callers
Class
Decoder
code/networks/unet.py:119
↓ 5 callers
Class
PNetBlock
code/networks/pnet.py:17
↓ 5 callers
Class
StackedConvLayers
code/networks/nnunet.py:97
↓ 4 callers
Class
Conv2dReLU
code/networks/attention.py:9
↓ 4 callers
Class
DownBlock
Downsampling followed by ConvBlock
code/networks/unet.py:50
↓ 4 callers
Class
DownsamplingConvBlock
code/networks/vnet.py:67
↓ 4 callers
Class
UpsamplingDeconvBlock
code/networks/vnet.py:94
↓ 3 callers
Class
ConvBlock
two convolution layers with batch norm and leaky relu
code/networks/unet.py:31
↓ 3 callers
Class
GridAttentionBlock3D
code/networks/grid_attention_layer.py:173
↓ 3 callers
Class
MultiAttentionBlock
code/networks/attention_unet.py:113
↓ 3 callers
Class
unet_3D
code/networks/unet_3D.py:20
↓ 2 callers
Class
Attention
code/networks/attention.py:92
↓ 2 callers
Class
DownsamplingBottleneck
Downsampling bottlenecks further downsample the feature map size. Main branch: 1. max pooling with stride 2; indices are saved to be used for
code/networks/enet.py:209
↓ 2 callers
Class
FeatureNoise
code/networks/unet.py:288
↓ 2 callers
Class
InitWeights_He
code/networks/nnunet.py:30
↓ 2 callers
Class
NLayerDiscriminator
code/networks/networks_other.py:481
↓ 2 callers
Class
PatchExpand
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:358
↓ 2 callers
Class
ResnetGenerator
code/networks/networks_other.py:301
↓ 2 callers
Class
SqEx
code/networks/utils.py:280
↓ 2 callers
Class
SwinTransformerBlock
r""" Swin Transformer Block. Args: dim (int): Number of input channels. input_resolution (tuple[int]): Input resulotion.
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:169
↓ 2 callers
Class
UnetGenerator
code/networks/networks_other.py:400
↓ 2 callers
Class
UpBlock
Upssampling followed by ConvBlock
code/networks/VoxResNet.py:64
↓ 2 callers
Class
Upsample
code/networks/nnunet.py:173
↓ 2 callers
Class
UpsamplingBottleneck
The upsampling bottlenecks upsample the feature map resolution using max pooling indices stored from the corresponding downsampling bottleneck.
code/networks/enet.py:340
↓ 2 callers
Class
VNet
code/networks/vnet.py:145
↓ 2 callers
Class
unet_3D_dv_semi
code/networks/unet_3D_dv_semi.py:13
↓ 1 callers
Class
Attention_UNet
code/networks/attention_unet.py:9
↓ 1 callers
Class
BasicLayer
A basic Swin Transformer layer for one stage. Args: dim (int): Number of input channels. input_resolution (tuple[int]): Input re
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:413
↓ 1 callers
Class
BasicLayer_up
A basic Swin Transformer layer for one stage. Args: dim (int): Number of input channels. input_resolution (tuple[int]): Input re
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:486
↓ 1 callers
Class
CTATransform
code/dataloaders/dataset.py:106
↓ 1 callers
Class
CenterBlock
code/networks/efficientunet.py:65
↓ 1 callers
Class
ConcatBlock
code/networks/pnet.py:45
↓ 1 callers
Class
ConvBlock
two convolution layers with batch norm and leaky relu
code/networks/VoxResNet.py:44
↓ 1 callers
Class
DecoderBlock
code/networks/efficientunet.py:27
↓ 1 callers
Class
Decoder_DS
code/networks/unet.py:156
↓ 1 callers
Class
Decoder_URPC
code/networks/unet.py:209
↓ 1 callers
Class
ENet
Generate the ENet model. Keyword arguments: - num_classes (int): the number of classes to segment. - encoder_relu (bool, optional): When `
code/networks/enet.py:453
↓ 1 callers
Class
Effi_UNet
Unet_ is a fully convolution neural network for image semantic segmentation Args: encoder_name: name of classification model (without las
code/networks/efficientunet.py:143
↓ 1 callers
Class
FC3DDiscriminator
code/networks/discriminator.py:6
↓ 1 callers
Class
FCDiscriminator
code/networks/discriminator.py:58
↓ 1 callers
Class
FinalPatchExpand_X4
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:385
↓ 1 callers
Class
Generic_UNet
code/networks/nnunet.py:186
↓ 1 callers
Class
InitialBlock
The initial block is composed of two branches: 1. a main branch which performs a regular convolution with stride 2; 2. an extension branch whi
code/networks/enet.py:5
↓ 1 callers
Class
MedicalImageDeal
code/dataloaders/brats_proprecessing.py:81
↓ 1 callers
Class
Mlp
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:9
↓ 1 callers
Class
OutPutBlock
code/networks/pnet.py:65
↓ 1 callers
Class
PNet2D
code/networks/pnet.py:87
↓ 1 callers
Class
PatchEmbed
r""" Image to Patch Embedding Args: img_size (int): Image size. Default: 224. patch_size (int): Patch token size. Default: 4.
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:548
↓ 1 callers
Class
ResnetBlock
code/networks/networks_other.py:354
↓ 1 callers
Class
SCSEModule
code/networks/attention.py:51
↓ 1 callers
Class
StorableCTAugment
code/augmentations/__init__.py:7
↓ 1 callers
Class
SwinTransformerSys
r""" Swin Transformer A PyTorch impl of : `Swin Transformer: Hierarchical Vision Transformer using Shifted Windows` - https://arxiv
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:599
↓ 1 callers
Class
UNet
code/networks/unet.py:304
↓ 1 callers
Class
UNet_CCT
code/networks/unet.py:324
↓ 1 callers
Class
UNet_DS
code/networks/unet.py:373
↓ 1 callers
Class
UNet_URPC
code/networks/unet.py:352
↓ 1 callers
Class
UnetDecoder
code/networks/efficientunet.py:84
↓ 1 callers
Class
UnetGridGatingSignal3
code/networks/utils.py:192
↓ 1 callers
Class
VoxResNet
code/networks/VoxResNet.py:79
↓ 1 callers
Class
WeakStrongAugment
returns weakly and strongly augmented images Args: object (tuple): output size of network
code/dataloaders/dataset.py:170
↓ 1 callers
Class
WindowAttention
r""" Window based multi-head self attention (W-MSA) module with relative position bias. It supports both of shifted and non-shifted window. A
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:63
↓ 1 callers
Class
conv2DBatchNorm
code/networks/utils.py:8
↓ 1 callers
Class
conv2DBatchNormRelu
code/networks/utils.py:34
↓ 1 callers
Class
unetConv2
code/networks/utils.py:62
Class
Activation
code/networks/attention.py:67
Class
AverageMeter
Computes and stores the average and current value
code/utils/util.py:164
Class
CTAugment
code/augmentations/ctaugment.py:39
Class
CenterCrop
code/dataloaders/brats2019.py:48
Class
ConvDropoutNonlinNorm
code/networks/nnunet.py:89
Class
ConvDropoutNormNonlin
fixes a bug in ConvDropoutNormNonlin where lrelu was used regardless of nonlin. Bad.
code/networks/nnunet.py:42
Class
CreateOnehotLabel
code/dataloaders/brats2019.py:164
Class
DiceLoss
code/utils/losses.py:156
Class
EfficientNetEncoder
code/networks/encoder_tool.py:67
Class
EfficientNetEncoder
code/networks/efficient_encoder.py:70
Class
EncoderMixin
Add encoder functionality such as: - output channels specification of feature tensors (produced by encoder) - patching first convoluti
code/networks/encoder_tool.py:10
Class
EncoderMixin
Add encoder functionality such as: - output channels specification of feature tensors (produced by encoder) - patching first convoluti
code/networks/efficient_encoder.py:13
Class
FCNConv3
code/networks/utils.py:126
Class
Flatten
code/networks/attention.py:108
Class
FocalLoss
code/utils/losses.py:119
Class
GANLoss
code/networks/networks_other.py:260
Class
GridAttentionBlock2D
code/networks/grid_attention_layer.py:162
Class
GridAttentionBlock2D_TORR
code/networks/grid_attention_layer.py:359
Class
GridAttentionBlock3D_TORR
code/networks/grid_attention_layer.py:377
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