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Functions575 in github.com/HiLab-git/SSL4MIS

↓ 1 callersFunctionget_comp_loss
get complementary loss and adaptive sample weight. Compares least likely prediction (from strong augment) with argmin of weak augment.
code/train_fixmatch_standard_augs.py:148
↓ 1 callersFunctionget_config
Get a yacs CfgNode object with default values.
code/config.py:222
↓ 1 callersFunctionget_config
Get a yacs CfgNode object with default values.
code/networks/config.py:222
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_cross_pseudo_supervision_2D.py:97
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_uncertainty_aware_mean_teacher_3D.py:67
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_regularized_dropout_3D.py:69
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_cross_pseudo_supervision_3D.py:67
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_cross_teaching_between_cnn_transformer_2D.py:143
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_fixmatch_cta.py:122
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_entropy_minimization_3D.py:67
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_mean_teacher_2D.py:80
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_uncertainty_rectified_pyramid_consistency_2D.py:76
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_interpolation_consistency_training_2D.py:82
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_cross_consistency_training_2D.py:76
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_mean_teacher_3D.py:67
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_regularized_dropout_2D.py:97
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_uncertainty_rectified_pyramid_consistency_3D.py:68
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_entropy_minimization_2D.py:81
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_fixmatch_standard_augs.py:118
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_deep_co_training_2D.py:81
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_adversarial_network_3D.py:69
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_interpolation_consistency_training_3D.py:71
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_uncertainty_aware_mean_teacher_2D.py:80
↓ 1 callersFunctionget_current_consistency_weight
(epoch)
code/train_adversarial_network_2D.py:82
↓ 1 callersFunctionget_encoder
(name, in_channels=3, depth=5, weights=None)
code/networks/efficient_encoder.py:203
↓ 1 callersMethodget_target_tensor
(self, input, target_is_real)
code/networks/networks_other.py:274
↓ 1 callersFunctioninfinite_shuffles
()
code/dataloaders/dataset.py:243
↓ 1 callersFunctioninfinite_shuffles
()
code/dataloaders/brats2019.py:227
↓ 1 callersFunctioninitialize_decoder
(module)
code/networks/efficientunet.py:9
↓ 1 callersFunctioninterleave
TF code def interleave(x, batch): s = x.get_shape().as_list() return tf.reshape(tf.transpose(tf.reshape(x, [-1, batch] + s[1:
code/augmentations/__init__.py:49
↓ 1 callersFunctionitensity_normalize_one_volume
normalize the itensity of an nd volume based on the mean and std of nonzeor region inputs: volume: the input nd volume outputs:
code/dataloaders/brats_proprecessing.py:62
↓ 1 callersFunctioniterate_eternally
(indices)
code/dataloaders/dataset.py:242
↓ 1 callersFunctioniterate_eternally
(indices)
code/dataloaders/brats2019.py:226
↓ 1 callersFunctioniterate_once
(iterable)
code/dataloaders/dataset.py:238
↓ 1 callersFunctioniterate_once
(iterable)
code/dataloaders/brats2019.py:222
↓ 1 callersFunctionkaiming_normal_init_weight
(model)
code/train_regularized_dropout_3D.py:81
↓ 1 callersFunctionkaiming_normal_init_weight
(model)
code/train_cross_pseudo_supervision_3D.py:79
↓ 1 callersFunctionload_checkpoint
loads previous checkpoint Args: path (str): path to checkpoint model (model): model to restore checkpoint to optimizer (o
code/utils/util.py:55
↓ 1 callersMethodload_from
(self, config)
code/networks/vision_transformer.py:54
↓ 1 callersMethodload_state_dict
(self, state_dict, **kwargs)
code/networks/efficient_encoder.py:105
↓ 1 callersFunctionnet_factory
(net_type="unet_3D", num_classes=3, in_channels=1)
code/test_urpc.py:14
↓ 1 callersFunctionnormalize
(tensor)
code/train_fixmatch_standard_augs.py:179
↓ 1 callersFunctionpatch_first_conv
Change first convolution layer input channels. In case: in_channels == 1 or in_channels == 2 -> reuse original weights in_channels
code/networks/encoder_tool.py:33
↓ 1 callersFunctionpatch_first_conv
Change first convolution layer input channels. In case: in_channels == 1 or in_channels == 2 -> reuse original weights in_channels
code/networks/efficient_encoder.py:36
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_cross_pseudo_supervision_2D.py:84
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_cross_teaching_between_cnn_transformer_2D.py:130
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_fixmatch_cta.py:95
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_mean_teacher_2D.py:67
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_uncertainty_rectified_pyramid_consistency_2D.py:63
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_interpolation_consistency_training_2D.py:69
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_cross_consistency_training_2D.py:63
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_regularized_dropout_2D.py:84
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_entropy_minimization_2D.py:68
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_fully_supervised_2D.py:54
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_fixmatch_standard_augs.py:91
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_deep_co_training_2D.py:68
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_uncertainty_aware_mean_teacher_2D.py:67
↓ 1 callersFunctionpatients_to_slices
(dataset, patiens_num)
code/train_adversarial_network_2D.py:69
↓ 1 callersFunctionrandom_rotate
(image, label)
code/dataloaders/dataset.py:88
↓ 1 callersFunctionrename_key
(key)
code/utils/util.py:37
↓ 1 callersMethodrescale_output_array
(self, newsize)
code/networks/utils.py:432
↓ 1 callersMethodreset
(self)
code/utils/util.py:170
↓ 1 callersMethodset_in_channels
Change first convolution chennels
code/networks/encoder_tool.py:21
↓ 1 callersMethodset_in_channels
Change first convolution chennels
code/networks/efficient_encoder.py:24
↓ 1 callersFunctiontest_all_case
(net, base_dir, test_list="val.list", num_classes=4, patch_size=(48, 160, 160), stride_xy=32, stride_z=24)
code/val_urpc_util.py:91
↓ 1 callersFunctiontest_all_case
(net, base_dir, method="unet_3D", test_list="full_test.list", num_classes=4, patch_size=(48, 160, 160), stride
code/test_urpc_util.py:96
↓ 1 callersFunctiontest_all_case
(net, base_dir, method="unet_3D", test_list="full_test.list", num_classes=4, patch_size=(48, 160, 160), stride
code/test_3D_util.py:91
↓ 1 callersFunctiontest_single_case
(net, image, stride_xy, stride_z, patch_size, num_classes=1)
code/val_urpc_util.py:14
↓ 1 callersFunctiontest_single_case
(net, image, stride_xy, stride_z, patch_size, num_classes=1)
code/test_urpc_util.py:14
↓ 1 callersFunctiontest_single_case
(net, image, stride_xy, stride_z, patch_size, num_classes=1)
code/test_3D_util.py:14
↓ 1 callersFunctiontest_single_case
(net, image, stride_xy, stride_z, patch_size, num_classes=1)
code/val_3D.py:14
↓ 1 callersFunctiontest_single_volume
(case, net, test_save_path, FLAGS)
code/test_2D_fully.py:40
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_cross_pseudo_supervision_2D.py:109
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_uncertainty_aware_mean_teacher_3D.py:79
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_regularized_dropout_3D.py:101
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_cross_pseudo_supervision_3D.py:99
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_cross_teaching_between_cnn_transformer_2D.py:155
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_fixmatch_cta.py:136
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_entropy_minimization_3D.py:79
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_mean_teacher_2D.py:92
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_uncertainty_rectified_pyramid_consistency_2D.py:81
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_interpolation_consistency_training_2D.py:94
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_cross_consistency_training_2D.py:81
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_mean_teacher_3D.py:79
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_regularized_dropout_2D.py:109
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_uncertainty_rectified_pyramid_consistency_3D.py:80
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_entropy_minimization_2D.py:86
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_fully_supervised_2D.py:67
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_fixmatch_standard_augs.py:132
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_deep_co_training_2D.py:86
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_adversarial_network_3D.py:81
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_interpolation_consistency_training_3D.py:83
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_uncertainty_aware_mean_teacher_2D.py:92
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_adversarial_network_2D.py:87
↓ 1 callersFunctiontrain
(args, snapshot_path)
code/train_fully_supervised_3D.py:55
↓ 1 callersMethodup_x4
(self, x)
code/networks/swin_transformer_unet_skip_expand_decoder_sys.py:775
↓ 1 callersFunctionupdate_config
(config, args)
code/config.py:190
↓ 1 callersFunctionupdate_config
(config, args)
code/networks/config.py:190
↓ 1 callersFunctionupdate_ema_variables
(model, ema_model, alpha, global_step)
code/train_uncertainty_aware_mean_teacher_3D.py:72
↓ 1 callersFunctionupdate_ema_variables
(model, ema_model, alpha, global_step)
code/train_fixmatch_cta.py:127
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