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github.com/GUDHI/gudhi-devel
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Functions
4,084 in github.com/GUDHI/gudhi-devel
⨍
Functions
4,084
◇
Types & classes
709
↓ 6 callers
Function
column_test_common_z2_operators
src/Persistence_matrix/test/pm_column_tests.h:463
↓ 6 callers
Function
column_test_common_z5_content_access
src/Persistence_matrix/test/pm_column_tests.h:326
↓ 6 callers
Function
column_test_common_z5_operators
src/Persistence_matrix/test/pm_column_tests.h:388
↓ 6 callers
Function
column_test_row_access_constructors
src/Persistence_matrix/test/pm_column_tests.h:534
↓ 6 callers
Method
compute_PD
\brief Computes the extended persistence diagram of the complex. * */
src/Nerve_GIC/include/gudhi/GIC.h:1159
↓ 6 callers
Method
compute_counter_for_given_cell
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:586
↓ 6 callers
Method
contains
* @brief returns true iff the simplex s belongs to the simplicial * complex. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:952
↓ 6 callers
Method
dimension
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:127
↓ 6 callers
Method
face_range
\brief Returns a range of permutahedral representations of faces of the simplex. * @param[in] value_dim The dimension of the faces. Must be between
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation.h:107
↓ 6 callers
Method
finished
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_triangles_iterators.h:90
↓ 6 callers
Method
first_vertex
* Returns the first and smallest vertex of the simplex. * * Be careful : assumes the simplex is non-empty. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:210
↓ 6 callers
Method
fit
Fit the BettiCurve class on a list of persistence diagrams: if any of the values in **sample_range** is numpy.nan, replace it with the corres
src/python/gudhi/representations/vector_methods.py:442
↓ 6 callers
Method
get_non_zero_content_range
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:632
↓ 6 callers
Method
get_simplex_address
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:919
↓ 6 callers
Function
get_uniform
src/common/include/gudhi/random.h:117
↓ 6 callers
Method
get_x_range
* The x-range of the persistence heat map. **/
src/Persistence_representations/include/gudhi/Persistence_heat_maps.h:616
↓ 6 callers
Function
hash_column
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/column_utilities.h:222
↓ 6 callers
Method
index
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simple_traits.h:148
↓ 6 callers
Method
is_non_zero
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:470
↓ 6 callers
Function
lagrangian_barycenter
:param pdiagset: a list of ``numpy.array`` of shape `(n x 2)` (`n` can variate), encoding a set of persistence diagrams with only finite
src/python/gudhi/wasserstein/barycenter.py:34
↓ 6 callers
Method
link
* Constructs the link of 'simplex' with points coordinates. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:893
↓ 6 callers
Function
manifold_tracing_algorithm
src/Coxeter_triangulation/include/gudhi/Manifold_tracing.h:223
↓ 6 callers
Method
multiply_and_add_inplace_front
* @brief Multiplies the first element with the second one and adds the third one, that is * `(e * m + a) % characteristic`, such that the result is
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:215
↓ 6 callers
Method
null_key
\brief Returns a fixed number not in the interval [0, `num_simplices()`). */
src/Simplex_tree/include/gudhi/Simplex_tree.h:807
↓ 6 callers
Method
num_vertices
src/GudhUI/gui/Menu_edge_contraction.cpp:73
↓ 6 callers
Method
persistence
This function computes and returns the persistence of the complex. :param homology_coeff_field: The homology coefficient field. Must be a
src/python/gudhi/cubical_complex.py:156
↓ 6 callers
Method
persistent_betti_numbers
This function returns the persistent Betti numbers of the simplicial complex. :param from_value: The persistence birth limit to be ad
src/python/gudhi/simplex_tree.py:267
↓ 6 callers
Method
rend
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:620
↓ 6 callers
Method
rend
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:177
↓ 6 callers
Method
self_siblings
src/Simplex_tree/include/gudhi/Simplex_tree.h:1439
↓ 6 callers
Method
set_automatic_resolution
Automatic tuning of resolution. \brief Computes the optimal length of intervals * (i.e. the smallest interval length avoiding discretizatio
src/Nerve_GIC/include/gudhi/GIC.h:536
↓ 6 callers
Method
set_dimension
\brief Set a dimension for the simplicial complex. * \details * If `exact` is false, `dimension` is only an upper bound on the dimension of th
src/Simplex_tree/include/gudhi/Simplex_tree.h:1469
↓ 6 callers
Method
set_graph_from_automatic_rips
src/Nerve_GIC/include/gudhi/GIC.h:425
↓ 6 callers
Function
set_seed
Sets the seed for internal GUDHI functionnalities that are using randomness. :param seed: The new seed value. .. note:: Th
src/python/gudhi/random.py:15
↓ 6 callers
Function
set_seed
* @brief Sets the seed for the default random engine. * * @param seed The new seed value. */
src/common/include/gudhi/random.h:102
↓ 6 callers
Method
skeleton_simplex_range
\brief Returns a range over the simplices of the dim-skeleton of the simplicial complex. * * The \f$d\f$-skeleton of a simplicial complex \f$\ma
src/Simplex_tree/include/gudhi/Simplex_tree.h:362
↓ 6 callers
Method
subtract_inplace_back
* @brief Stores in the second element the subtraction in the field of the first element by the second element, * that is `(e1 - e2) % 2`, such that
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:167
↓ 6 callers
Function
timing_persistence
src/Persistent_cohomology/benchmark/performance_rips_persistence.cpp:138
↓ 6 callers
Method
top_dimensional_cells_iterator_end
* Function returning a Top_dimensional_cells_iterator beyond the last top dimensional cell of the bitmap. **/
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:398
↓ 6 callers
Function
trace_and_check_collapse
src/Collapse/test/collapse_unit_test.cpp:48
↓ 6 callers
Method
v0_handle
src/Contraction/include/gudhi/Contraction/Edge_profile.h:65
↓ 5 callers
Function
_warn_infty
Handle essential parts with different cardinalities. Warn the user about cost being infinite and (if `matching=True`) about the returned matc
src/python/gudhi/wasserstein/wasserstein.py:216
↓ 5 callers
Method
add_and_multiply
* @brief Adds the first element to the second one and multiplies the third one with it. * Returns the result in the field. * * @warning Not o
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:240
↓ 5 callers
Function
add_triangle
src/Skeleton_blocker/test/test_skeleton_blocker_complex.cpp:611
↓ 5 callers
Function
add_triangle_edges
src/Skeleton_blocker/test/test_skeleton_blocker_complex.cpp:601
↓ 5 callers
Method
boundary_opposite_vertex_simplex_range
src/Simplex_tree/include/gudhi/Simplex_tree.h:456
↓ 5 callers
Method
change_offset
\brief Change the offset vector to a given value. * @param[in] offset New value of the offset vector. */
src/Coxeter_triangulation/include/gudhi/Freudenthal_triangulation.h:113
↓ 5 callers
Method
coface_range
\brief Returns a range of permutahedral representations of cofaces of the simplex. * @param[in] value_dim The dimension of the cofaces. Must be bet
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation.h:122
↓ 5 callers
Function
combinations
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:163
↓ 5 callers
Function
construct_incremental_delaunay
src/Alpha_complex/include/gudhi/Incremental_delaunay.h:42
↓ 5 callers
Method
contraction
src/Toplex_map/include/gudhi/Toplex_map.h:211
↓ 5 callers
Method
create_from_array
Creates a new, empty complex and inserts vertices and edges. The vertices are numbered from 0 to n-1, and the filtration values are encoded in
src/python/gudhi/simplex_tree.py:94
↓ 5 callers
Method
create_simplex_tree
Args: max_alpha_square (float): The maximum alpha square threshold the simplices shall not exceed. Default is set
src/python/gudhi/delaunay_complex.py:118
↓ 5 callers
Method
dimension
src/Hasse_complex/include/gudhi/Hasse_complex.h:152
↓ 5 callers
Method
euler_characteristic
* @brief Computes and returns the Euler characteristic of the non-filtered underlying complex represented * by the simplex tree. */
src/Simplex_tree/include/gudhi/Simplex_tree.h:945
↓ 5 callers
Function
export_to_off
src/Tangential_complex/benchmark/benchmark_tc.cpp:239
↓ 5 callers
Method
extents
constructors
src/common/include/gudhi/simple_mdspan.h:138
↓ 5 callers
Function
fun
(*kargs, **kwargs)
src/python/test/test_wasserstein_distance.py:280
↓ 5 callers
Method
get_address
* Compute the local vertex in L corresponding to the vertex global in K. * runs in O(log n) if n = num_vertices() */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_sub_complex.h:165
↓ 5 callers
Method
get_dimension
src/Alpha_complex/include/gudhi/Alpha_complex/Alpha_kernel_d.h:103
↓ 5 callers
Method
get_non_zero_content_range
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/vector_column.h:732
↓ 5 callers
Method
insert_batch_vertices
src/Simplex_tree/include/gudhi/Simplex_tree.h:1809
↓ 5 callers
Function
intersect_lifetimes
src/Simplex_tree/include/gudhi/Simplex_tree/filtration_value_utils.h:79
↓ 5 callers
Method
intersects
src/Coxeter_triangulation/include/gudhi/Implicit_manifold_intersection_oracle.h:150
↓ 5 callers
Method
is_empty
\brief Returns whether the complex is empty. */
src/Simplex_tree/include/gudhi/Simplex_tree.h:837
↓ 5 callers
Method
last_vertex
* Returns the last and greatest vertex of the simplex. * * Be careful : assumes the simplex is non-empty. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:220
↓ 5 callers
Function
log2up
src/Ripser/include/gudhi/ripser.h:445
↓ 5 callers
Method
multi_augment
src/Bottleneck_distance/include/gudhi/Graph_matching.h:65
↓ 5 callers
Method
multiplicative_identity
\brief Returns the multiplicative identity \f$1_{\Bbbk}\f$ of the field.*/
src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h:88
↓ 5 callers
Method
multiply_and_add
* @brief Multiplies the first element with the second one and adds the third one. Returns the result in the field. * * @warning Not overflow saf
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:203
↓ 5 callers
Method
num_connected_components
* @brief returns the number of connected components in the graph of the 1-skeleton. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1029
↓ 5 callers
Method
num_triangles
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:987
↓ 5 callers
Method
number_of_nonzero_levels
* This function computes maximal lambda for which lambda-level landscape is nonzero. **/
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:656
↓ 5 callers
Method
on_the_u_diagonal
src/Bottleneck_distance/include/gudhi/Persistence_graph.h:122
↓ 5 callers
Method
on_the_v_diagonal
src/Bottleneck_distance/include/gudhi/Persistence_graph.h:126
↓ 5 callers
Method
out
src/Persistent_cohomology/include/gudhi/Persistence_on_rectangle.h:67
↓ 5 callers
Function
print_current_representative_cycles
src/Persistence_matrix/example/example_remove_insert_swap_with_cycles.cpp:27
↓ 5 callers
Method
rank_dynamic
src/common/include/gudhi/simple_mdspan.h:115
↓ 5 callers
Method
remove_maximal_cell
src/Persistence_matrix/include/gudhi/Matrix.h:1862
↓ 5 callers
Method
remove_maximal_simplex
src/python/include/python_interfaces/Simplex_tree_interface.h:160
↓ 5 callers
Method
reset_filtration
\brief This function resets the filtration value of all the simplices of dimension at least min_dim. Resets all * the Simplex_tree when `min_dim =
src/Simplex_tree/include/gudhi/Simplex_tree.h:2884
↓ 5 callers
Method
set_cover_from_Voronoi
src/Nerve_GIC/include/gudhi/GIC.h:889
↓ 5 callers
Method
set_simplex
src/Ripser/include/gudhi/ripser.h:868
↓ 5 callers
Method
set_up_containers
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:564
↓ 5 callers
Method
set_up_containers
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h:274
↓ 5 callers
Method
size
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_set_column.h:502
↓ 5 callers
Method
size
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_list_column.h:522
↓ 5 callers
Method
star_simplex_range
* @brief Returns a Complex_simplex_around_vertex_range over all the simplices around a vertex of the complex */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1398
↓ 5 callers
Function
subfaces
src/Skeleton_blocker/test/test_skeleton_blocker_complex.cpp:650
↓ 5 callers
Method
update
src/Bottleneck_distance/include/gudhi/Graph_matching.h:147
↓ 4 callers
Function
Gaussian_function
src/Persistence_representations/example/persistence_heat_maps.cpp:21
↓ 4 callers
Function
_basic_wasserstein
(wasserstein_distance, delta, test_infinity=True, test_matching=True)
src/python/test/test_wasserstein_distance.py:163
↓ 4 callers
Method
_birth_val
src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_vine_swap.h:188
↓ 4 callers
Function
_capture_license_output
(fetch_method, **kwargs)
src/python/test/test_remote_datasets.py:44
↓ 4 callers
Function
_dist_to_diag
:param X: (n x 2) array encoding the points of a persistent diagram. :param internal_p: Ground metric (i.e. norm L^p). :returns: (n) arra
src/python/gudhi/wasserstein/wasserstein.py:30
↓ 4 callers
Function
_fetch_remote
Fetch the wanted dataset from the given url and save it in file_path. Parameters ---------- url : string The url to fetch th
src/python/gudhi/datasets/remote.py:96
↓ 4 callers
Function
_get_essential_parts
:param a: (n x 2) numpy.array (point of a diagram) :returns: five lists of indices (between 0 and len(a)) accounting for the five types of po
src/python/gudhi/wasserstein/wasserstein.py:96
↓ 4 callers
Function
_get_next_line
Return the next line that is not a comment. :param file_desc: An open file in read mode. :type file_desc: file :param comment: The charac
src/python/gudhi/off_utils.py:19
↓ 4 callers
Function
_grid_from_sample_range
(self, X)
src/python/gudhi/representations/vector_methods.py:188
↓ 4 callers
Function
_multiply_source_and_add_to_column
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/column_utilities.h:186
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