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Functions4,084 in github.com/GUDHI/gudhi-devel

Methodcall
Apply GaussianPerslayPhi on a ragged tensor containing a list of persistence diagrams. Parameters: diagrams (n x None x
src/python/gudhi/tensorflow/perslay.py:154
Methodcall
Apply TentPerslayPhi on a ragged tensor containing a list of persistence diagrams. Parameters: diagrams (n x None x 2):
src/python/gudhi/tensorflow/perslay.py:206
Methodcall
Apply FlatPerslayPhi on a ragged tensor containing a list of persistence diagrams. Parameters: diagrams (n x None x 2):
src/python/gudhi/tensorflow/perslay.py:246
Methodcall
Apply Perslay on a ragged tensor containing a list of persistence diagrams. Parameters: diagrams (n x None x 2): ragged
src/python/gudhi/tensorflow/perslay.py:293
Methodchange_draw_edges
src/GudhUI/view/Viewer_instructor.cpp:167
Methodchange_draw_triangles
src/GudhUI/view/Viewer_instructor.cpp:171
Methodchange_draw_vertices
src/GudhUI/view/Viewer_instructor.cpp:163
Methodchange_light
src/GudhUI/view/Viewer_instructor.cpp:175
Methodcheck_if_defined_on_the_same_domain
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:414
Functionchildren
Careful -> children_ can be NULL*/
src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h:65
Functionchrono
src/Toplex_map/benchmark/benchmark_tm.cpp:75
Methodclass_key
\brief Returns the key of the representative simplex of * the set of simplices having this column as annotation vector * in the compressed annot
src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h:96
Methodclean
src/Toplex_map/include/gudhi/Lazy_toplex_map.h:234
Methodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_set_column.h:548
Methodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/intrusive_list_column.h:558
Methodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/naive_vector_column.h:534
Methodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/list_column.h:534
Methodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/heap_column.h:522
Functionclear_data_home
Delete the data home cache directory and all its content. Parameters ---------- data_home : string, default is None. The pat
src/python/gudhi/datasets/remote.py:54
Methodclear_filtration
\brief Clears the filtration cache produced by initialize_filtration(). * * Useful when initialize_filtration() has already been called and we p
src/Simplex_tree/include/gudhi/Simplex_tree.h:1613
MethodcloseEvent
src/GudhUI/gui/MainWindow.cpp:45
Methodclose_file
src/Tangential_complex/benchmark/XML_exporter.h:133
Methodcmp_intervals
src/Collapse/example/edge_collapse_conserve_persistence.cpp:43
Methodcmp_intervals_by_dim_then_length
src/Persistent_cohomology/example/custom_persistence_sort.cpp:56
Methodcmp_intervals_by_dim_then_length
src/Persistent_cohomology/test/betti_numbers_unit_test.cpp:33
Methodcmp_intervals_by_length
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:569
Methodcocycle
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:724
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_chair_in_R3.h:45
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_moment_curve_in_Rd.h:41
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_lemniscate_revolution_in_R3.h:46
Methodcod_d
\brief Returns the codomain dimension. Same as the codimension of the sphere. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_Sm_in_Rd.h:45
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_whitney_umbrella_in_R3.h:43
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Translate.h:45
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_iron_in_R3.h:45
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Linear_transformation.h:44
Methodcod_d
\brief Returns the codomain dimension. Same as the codimension of the sphere. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_affine_plane_in_Rd.h:41
Methodcod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/Function_torus_in_R3.h:44
Methodcod_d
\brief Returns the codomain dimension. Same as the codimension of the sphere. */
src/Coxeter_triangulation/include/gudhi/Functions/Constant_function.h:39
Methodcofaces_of_cubical_persistence_pairs
This function computes the top-dimensional cofaces associated to the positive and negative simplices of a cubical complex. The output format is a vect
src/python/include/python_interfaces/Persistent_cohomology_interface.h:84
Methodcollapse_edges
src/python/include/python_interfaces/Simplex_tree_interface.h:203
Methodcollapse_edges
src/GudhUI/utils/Edge_collapsor.h:49
Methodcollapse_edges
src/GudhUI/model/Model.h:190
Methodcollapse_edges
src/GudhUI/gui/MainWindow.cpp:222
Methodcollapse_vertices
src/GudhUI/utils/Vertex_collapsor.h:56
Methodcollapse_vertices
src/GudhUI/model/Model.h:184
Methodcollapse_vertices
src/GudhUI/gui/MainWindow.cpp:228
Methodcollect_edges
* @brief Collect edges. * * Iterates over all edges of the simplicial complex and * 1) inserts them in the priority queue sorted according to
src/Contraction/include/gudhi/Skeleton_blocker_contractor.h:283
Functioncolumn_test_base_boundary_constructors
src/Persistence_matrix/test/pm_column_tests.h:609
Functioncolumn_test_base_boundary_z2_methods
src/Persistence_matrix/test/pm_column_tests.h:670
Functioncolumn_test_base_boundary_z5_methods
src/Persistence_matrix/test/pm_column_tests.h:639
Functioncolumn_test_boundary_chain_methods
src/Persistence_matrix/test/pm_column_tests.h:875
Functioncolumn_test_boundary_methods
src/Persistence_matrix/test/pm_column_tests.h:901
Functioncolumn_test_chain_methods
src/Persistence_matrix/test/pm_column_tests.h:1027
Functioncolumn_test_common_constructors
src/Persistence_matrix/test/pm_column_tests.h:230
Methodcommit
src/Tangential_complex/benchmark/benchmark_tc.cpp:97
Methodcommon_neighbors
Open neighborhood At some point it helped gcc to add __attribute__((noinline)) here, otherwise we had +50% on the running time on one example. It look
src/Collapse/include/gudhi/Flag_complex_edge_collapser.h:116
FunctioncompareFirstElementsOfTuples
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:1051
Functioncompare_delaunay_complex_simplices
src/Alpha_complex/test/Delaunay_complex_unit_test.h:26
Functioncompare_points_sorting
landscapes * @private * This method provides a comparison of points that is used in construction of persistence landscapes. The ordering is * lexico
src/Persistence_representations/include/gudhi/common_persistence_representations.h:94
Methodcomplete
* @brief returns true iff the graph of the 1-skeleton of the complex is complete. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1022
Methodcompute_average
* A function to compute averaged persistence landscape on a grid, based on vector of persistence landscapes on grid. * This function is required by
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:974
Methodcompute_average
src/Persistence_representations/include/gudhi/Persistence_heat_maps.h:1022
Methodcompute_average
* A function to compute averaged persistence landscape, based on vector of persistence landscapes. * This function is required by Topological_data_
src/Persistence_representations/include/gudhi/Persistence_landscape.h:682
Methodcompute_boundary_lambda
src/Coxeter_triangulation/include/gudhi/Implicit_manifold_intersection_oracle.h:70
Methodcompute_bounding_box_corners
src/GudhUI/view/Viewer_instructor.cpp:31
Methodcompute_confidence_level_from_distance
\brief Computes the confidence level of a specific bottleneck distance threshold. * * @param[in] d Bottleneck distance. * */
src/Nerve_GIC/include/gudhi/GIC.h:1286
Methodcompute_dim_0_pairs
src/Ripser/include/gudhi/ripser.h:1048
Methodcompute_distance_from_confidence_level
\brief Computes the bottleneck distance threshold corresponding to a specific confidence level. * * @param[in] alpha Confidence level. * *
src/Nerve_GIC/include/gudhi/GIC.h:1273
Methodcompute_distance_of_landscapes
src/Persistence_representations/include/gudhi/Persistence_landscape.h:464
Methodcompute_distance_of_landscapes_on_grid
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:872
Methodcompute_edges
src/GudhUI/utils/Rips_builder.h:43
Methodcompute_edges
src/GudhUI/utils/K_nearest_builder.h:56
Methodcompute_extended_filtration
src/python/include/python_interfaces/Simplex_tree_interface.h:197
Methodcompute_extended_persistence_subdiagrams
src/python/include/python_interfaces/Persistent_cohomology_interface.h:296
Methodcompute_incidence_between_cells
* This procedure compute incidence numbers between cubes. For a cube \f$A\f$ of * dimension n and a cube \f$B \subset A\f$ of dimension n-1, an inci
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h:119
Methodcompute_inner_product
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:757
Methodcompute_inner_product
src/Persistence_representations/include/gudhi/Persistence_landscape.h:530
Methodcompute_lambda
src/Coxeter_triangulation/include/gudhi/Implicit_manifold_intersection_oracle.h:45
Methodcompute_link_blockers
* compute the blockers of the link if is_alpha_blocker is false. * Otherwise, alpha is a blocker, and the link is computed in the complex where
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_link_complex.h:203
Methodcompute_link_edges
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_link_complex.h:153
Methodcompute_link_vertices
* @brief compute vertices of the link. * If the boolean only_superior_vertices is true, then only the vertices * are greater than vertices of a
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_link_complex.h:99
Methodcompute_max_norm_distance_of_landscapes
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:688
Methodcompute_max_norm_distance_of_landscapes
src/Persistence_representations/include/gudhi/Persistence_landscape.h:454
Methodcompute_maximal_distance_non_symmetric
src/Persistence_representations/include/gudhi/Persistence_landscape.h:788
Methodcompute_norm_of_landscape
* Computations of a \f$L^i\f$ norm of landscape, where i is the input parameter. **/
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:668
Methodcompute_pairs
src/Ripser/include/gudhi/ripser.h:1152
Methodcompute_pairwise_distances
src/Nerve_GIC/include/gudhi/GIC.h:398
Methodcompute_persistence
TODO: move to the constructors?
src/python/include/python_interfaces/Persistent_cohomology_interface.h:58
Methodcompute_persistence
src/GudhUI/gui/MainWindow.cpp:267
Methodcompute_position_in_bitmap
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:578
Methodcompute_proximity_graph
src/Rips_complex/include/gudhi/Rips_complex.h:127
Methodcompute_punctual_expansion
\brief Inserts a Node with label @p v in the set of siblings sib, and percolate the * expansion on the subtree rooted at sib. Sibling sib must not
src/Simplex_tree/include/gudhi/Simplex_tree.h:1994
Functioncompute_root_square
src/Bottleneck_distance/example/alpha_rips_persistence_bottleneck_distance.cpp:47
Methodcompute_scalar_product
* A function to compute scalar product of persistence landscape on a grid. * The parameter of this function is a Persistence_landscape_on_grid.
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:1050
Methodcompute_scalar_product
* A function to compute scalar product of persistence landscapes. * The parameter of this function is a Persistence_landscape. * This function i
src/Persistence_representations/include/gudhi/Persistence_landscape.h:754
Methodcompute_sparse_graph
src/Rips_complex/include/gudhi/Sparse_rips_complex.h:188
Methodcompute_trie_and_nodes_to_be_seen
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_simplices_iterators.h:96
MethodconnectActions
src/GudhUI/gui/MainWindow.cpp:50
MethodconnectActions
src/GudhUI/gui/Menu_edge_contraction.cpp:22
MethodconnectActions
src/GudhUI/gui/Menu_uniform_neighbors.cpp:19
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