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Functions5,261 in github.com/GMUEClab/ecj

↓ 7 callersMethodisLocal
Returns true if this address does not contain a physical address, only a name.
contrib/drm/drm/agentbase/Address.java:106
↓ 7 callersMethodloadParameterDatabase
(String filename)
contrib/drm/ec/drm/DRMLauncher.java:40
↓ 7 callersMethodmonotoneTFosc
(double[] f)
ecj/src/main/java/ec/app/bbob/BBOBenchmarks.java:1892
↓ 7 callersMethodnewIndividual
(final EvolutionState state, int thread)
ecj/src/main/java/ec/eda/pbil/PBILSpecies.java:157
↓ 7 callersMethodnextFloat
()
ecj/src/test/java/ec/test/TestPRNG.java:184
↓ 7 callersMethodnextGaussian
A bug fix for all JDK code including 1.2. nextGaussian can theoretically ask for the log of 0 and divide it by 0! See Java bug <a hr
ecj/src/main/java/ec/util/MersenneTwister.java:622
↓ 7 callersMethodnodeNumber
Determine the node number from the given genome position. Function arguments refer to node numbers. Inputs are numbered from [0, numInputs - 1]. Funct
contrib/cgp/ec/cgp/representation/VectorSpeciesCGP.java:164
↓ 7 callersMethodnumOfObservations
Return the number of simulation have done with current individual.
ecj/src/main/java/ec/eda/dovs/DOVSFitness.java:61
↓ 7 callersMethodprintIndividualForHumans
(final EvolutionState state, final int log)
ecj/src/main/java/ec/gp/GPIndividual.java:204
↓ 7 callersMethodreadIntegerWithPreamble
Finds the next nonblank line, skips past an expected preamble, and reads in an integer if there is one, and returns it. Generates an error oth
ecj/src/main/java/ec/util/Code.java:712
↓ 7 callersMethodrepOK
()
ecj/src/main/java/ec/co/ant/SimpleConstructionRule.java:74
↓ 7 callersMethodrepOK
()
ecj/src/main/java/ec/app/knapsack/KnapsackProblem.java:117
↓ 7 callersMethodsetup
(final EvolutionState state, final Parameter base)
ecj/src/main/java/ec/co/ant/AntSystemUpdateRule.java:36
↓ 7 callersMethodsuicide
Removes the agent from the base. <b>Look out!</b> The method that calls this method will not exit, the thread will not be stopped as a result. It only
contrib/drm/drm/agents/Agent.java:337
↓ 7 callersMethodtestRank
(final List<Individual> archive, final List<Individual> rank, final int rankID)
ecj/src/test/java/ec/multiobjective/nsga2/NSGA2BreederTest.java:146
↓ 7 callersMethodtoString
()
contrib/gep/ec/gep/GEPSymbol.java:61
↓ 6 callersMethodSSfitness
Calculates the fitness for the SS (Sensitivity/specificity) type fitness. Gets the raw fitness and then normalizes between 0 and max value (maxValue S
contrib/gep/ec/gep/GEPFitnessFunction.java:1756
↓ 6 callersMethodaddParent
(ParameterDatabase database)
ecj/src/main/java/ec/util/ParameterDatabase.java:2851
↓ 6 callersMethodbase
Returns the default base.
ecj/src/main/java/ec/steadystate/SteadyStateDefaults.java:29
↓ 6 callersMethodbetterThan
(Fitness _fitness)
contrib/cgp/ec/cgp/FitnessCGP.java:13
↓ 6 callersMethodcloseContacts
Doesn't do anything.
ecj/src/main/java/ec/simple/SimpleExchanger.java:70
↓ 6 callersMethodcomputeMaxGene
Computes max possible gene value for the given position. Min gene value is assumed to always be zero. The max value depends on the phenotype of the gi
contrib/cgp/ec/cgp/representation/VectorSpeciesCGP.java:122
↓ 6 callersMethodcreateNetwork
()
ecj/src/main/java/ec/neat/NEATIndividual.java:1219
↓ 6 callersMethoddetermineThreads
Loads the number of threads.
ecj/src/main/java/ec/Evolve.java:294
↓ 6 callersMethoddiscretize
(double value, int max)
ecj/src/main/java/ec/app/mona/Picture.java:41
↓ 6 callersMethodfireMessage
Creates a message and fires it. @param recipient Recipient of the message. @param type Type of the message. @param contstr The string content of the m
contrib/drm/ec/drm/EvolutionAgent.java:174
↓ 6 callersMethodgenerateTreeForInt
generate the lambdaTree that represents a natural number in the Church numeral form. @param state @param theInt the natural number you want to convert
contrib/lambda/ec/gp/lambda/interpreter/CNInterpreter.java:147
↓ 6 callersMethodgetConfusionMatrixValues
Given an individual calculate the true positive (TP), false negative (FN), false positive (FP) and true negative (TN) values of the model formed by th
contrib/gep/ec/gep/GEPFitnessFunction.java:2055
↓ 6 callersMethodgetNextSibling
()
contrib/xholon/ec/gp/GPNode.java:1227
↓ 6 callersMethodgetThreadCount
(String text)
ecj/src/main/java/ec/display/ControlPanel.java:387
↓ 6 callersMethodinitializeContacts
Doesn't do anything.
ecj/src/main/java/ec/simple/SimpleExchanger.java:42
↓ 6 callersMethodjoin
Joins the n pieces and sets the genome to their concatenation. The default form does nothing. It should be trivial to implement it f
ecj/src/main/java/ec/vector/VectorIndividual.java:142
↓ 6 callersMethodload
Loads given file. Calls <code>Properties.load</code> with a file input stream to the given file.
contrib/drm/drm/util/ConfigProperties.java:150
↓ 6 callersMethodlt
Returns true if a < b, else false
ecj/src/main/java/ec/util/SortComparator.java:27
↓ 6 callersMethodmaximumMuLambdaDivisor
lambda should be no SMALLER than mu times this value. This varies between (mu,lambda) (where it's 2) and (mu + lambda) (where it's 1)
ecj/src/main/java/ec/es/MuCommaLambdaBreeder.java:102
↓ 6 callersMethodmutationIsBounded
(int gene)
ecj/src/main/java/ec/vector/FloatVectorSpecies.java:306
↓ 6 callersMethodnextLong
This method is for completness' sake. Returns a long drawn uniformly from 0 to n-1. Suffice it to say, n must be greater than 0, or
ecj/src/main/java/ec/util/MersenneTwister.java:490
↓ 6 callersMethodoutOfRangeRetryLimitReached
(EvolutionState state)
ecj/src/main/java/ec/vector/FloatVectorSpecies.java:268
↓ 6 callersMethodparetoDominates
Returns true if I'm better than _fitness. The rule I'm using is this: if I am better in one or more criteria, and we are equal in the others, then bet
ecj/src/main/java/ec/multiobjective/MultiObjectiveFitness.java:361
↓ 6 callersMethodpartitionIntoParetoFront
Divides an array of Individuals into the Pareto front and the "nonFront" (everyone else). The Pareto front is returned. You may provide ArrayLists fo
ecj/src/main/java/ec/multiobjective/MultiObjectiveFitness.java:410
↓ 6 callersMethodpop
Returns 0 if the IntBag is empty, else removes and returns the topmost int.
ecj/src/main/java/ec/util/IntBag.java:148
↓ 6 callersMethodprintDFormat
Format method for the d conversion specifer and short argument. For d format, the flag character '-', means that the output should be left justified
contrib/drm/drm/util/PrintfFormat.java:1979
↓ 6 callersMethodprintFitness
Should print the fitness out in a computer-readable fashion, with a verbosity of Output.V_NO_GENERAL.
ecj/src/main/java/ec/Fitness.java:214
↓ 6 callersMethodprintOFormat
Format method for the o conversion character and short argument. For o format, the flag character '-', means that the output should be left justified
contrib/drm/drm/util/PrintfFormat.java:2454
↓ 6 callersMethodprintXFormat
Format method for the x conversion character and short argument. For x format, the flag character '-', means that the output should be left justified
contrib/drm/drm/util/PrintfFormat.java:2133
↓ 6 callersMethodproduce
(final int subpopulation, final EvolutionState state, final int thread)
ecj/src/main/java/ec/es/ESSelection.java:68
↓ 6 callersMethodread
()
ecj/src/main/java/ec/util/DataPipe.java:104
↓ 6 callersMethodreinitializeContacts
Gets peers from the collective.
contrib/drm/ec/drm/DRMExchanger.java:147
↓ 6 callersMethodrepOK
()
ecj/src/main/java/ec/co/ant/ProportionateComponentSelector.java:95
↓ 6 callersMethodrepOK
()
ecj/src/main/java/ec/co/ant/PseudorandomProportionateComponentSelector.java:95
↓ 6 callersMethodsetReply
This method allows the recipient of the message to send a reply object when handling the message. This object is sent back to the sender. <p>The objec
contrib/drm/drm/agentbase/Message.java:129
↓ 6 callersMethodsetRoot
( Address r )
contrib/drm/ec/drm/EvolutionAgent.java:120
↓ 6 callersMethodsetSeed
(String seed, int experimentNum, int threadNum)
ecj/src/main/java/ec/display/ControlPanel.java:508
↓ 6 callersMethodsetValues
Copy the values provided so the data for the (only) dependent variable is available as required. Also calculate a set of useful statistical values for
contrib/gep/ec/gep/GEPDependentVariable.java:132
↓ 6 callersMethodstandardizedFitness
Returns the standardized fitness metric.
ecj/src/main/java/ec/gp/koza/KozaFitness.java:105
↓ 6 callersMethodstartFresh
Usually called after setup(), startFresh() calls the initializers of the EvolutionState modules, effectively enabling a EvolutionState to start evolv
contrib/drm/ec/drm/EvolutionAgent.java:382
↓ 6 callersMethodtoString
()
ecj/src/main/java/ec/eval/SlaveConnection.java:131
↓ 6 callersMethodvalid
Tests the Individual to see if its values are in range.
ecj/src/main/java/ec/de/DEBreeder.java:146
↓ 5 callersMethodatDepth
Returns the depth at which I appear in the tree, which is a value >= 0. O(ln n) avg.
ecj/src/main/java/ec/gp/GPNode.java:381
↓ 5 callersMethodchooseWithoutReplacement
(EvolutionState state, int thread, int numberToSelect, int numberInSelectionSet)
contrib/gep/ec/gep/GEPBreedingPipeline.java:100
↓ 5 callersMethodcloneReplacing
Deep-clones the tree rooted at this node, and returns the entire copied tree. The result has everything set except for the root node'
ecj/src/main/java/ec/gp/GPNode.java:668
↓ 5 callersMethodclose
Closes the connection, ie the streams and the socket. @throws IOException if any closing operation throws one
contrib/drm/drm/agentbase/Connection.java:162
↓ 5 callersMethodconstructSolution
Constructs a solution by greedily adding the lowest-desirability component at each step until a complete solution is formed. The pheromone matrix arg
ecj/src/main/java/ec/co/ant/SimpleConstructionRule.java:45
↓ 5 callersMethodcreateNodeCopyIfMissing
Create the node if the nodeList do not have that node.The nodes in the nodeList is guarantee in ascending order according to node's nodeId.
ecj/src/main/java/ec/neat/NEATIndividual.java:997
↓ 5 callersMethoddestroyAgent
Destroys an agent with all necessary clean up. The method {@link IAgent#onDestruction()} will be called before removing the agent from the base. The a
contrib/drm/drm/agentbase/IBase.java:64
↓ 5 callersMethodfinishProducing
Called after produce(...), usually once a generation, or maybe only once if you're doing steady-state evolution (at the end of the run).
ecj/src/main/java/ec/BreedingSource.java:171
↓ 5 callersMethodgenotypeToStringForHumans
()
contrib/gep/ec/gep/GEPChromosome.java:264
↓ 5 callersMethodget
(final int i)
ecj/src/main/java/ec/co/ConstructiveIndividual.java:39
↓ 5 callersMethodgetDRM
This returns a reference through which information about the hosting DRM can be requested. @throws ClassCastException If the IDRM interface is not imp
contrib/drm/drm/agents/Agent.java:360
↓ 5 callersMethodgetEdge
(final int from, final int to)
ecj/src/main/java/ec/app/tsp/TSPGraph.java:164
↓ 5 callersMethodgetInfo
Implementations can use this function to return additional information about the request. @param q the string id of the requested information @return
contrib/drm/drm/agentbase/IRequest.java:61
↓ 5 callersMethodgetNumChoices
Returns the current number of choices to the node.
ecj/src/main/java/ec/gp/ge/GrammarRuleNode.java:34
↓ 5 callersMethodgetObjectives
Returns the objectives as an array. Note that this is the actual array . Though you could set values in this array, you should NOT do this -- rather,
ecj/src/main/java/ec/multiobjective/MultiObjectiveFitness.java:172
↓ 5 callersMethodgetRootAddress
Returns the root address.
contrib/drm/ec/drm/EvolutionAgent.java:136
↓ 5 callersMethodgoOnline
The base tries to go online on one of the ports from the given range (inclusive the limits). Being online means that the base starts to listen to inco
contrib/drm/drm/agentbase/Base.java:1035
↓ 5 callersMethodisCompleteSolution
Determine whether a given specifies a complete solution to this problem. @param solution A partial or complete solution to this ConstructiveProblemFo
ecj/src/main/java/ec/co/ConstructiveProblemForm.java:52
↓ 5 callersMethodisGroupedProblem
()
ecj/src/main/java/ec/gp/ge/GEProblem.java:254
↓ 5 callersMethodisOnline
()
contrib/drm/drm/agentbase/Base.java:1327
↓ 5 callersMethodlist
Prints out all the parameters in the database, but not shadowed parameters.
ecj/src/main/java/ec/util/ParameterDatabase.java:3341
↓ 5 callersMethodload
Loads the original and creates a new blank image to scribble on, and a new graphics object.
ecj/src/main/java/ec/app/mona/Picture.java:160
↓ 5 callersMethodmessage
()
ecj/src/main/java/ec/util/Version.java:46
↓ 5 callersMethodnewIndividual
Provides a brand-new individual to fill in a population. The default form simply calls clone(), creates a fitness, sets evaluated to false,
ecj/src/main/java/ec/Species.java:123
↓ 5 callersMethodnextFloat
Returns a random float in the half-open range from [0.0f,1.0f). Thus 0.0f is a valid result but 1.0f is not.
ecj/src/main/java/ec/util/MersenneTwisterFast.java:1116
↓ 5 callersMethodnodeInPosition
Returns the p'th node, constrained by nodesearch, in the subtree for which this GPNode is root. Use numNodes(nodesearch) to determine
ecj/src/main/java/ec/gp/GPNode.java:536
↓ 5 callersMethodnumNodes
()
ecj/src/main/java/ec/app/tsp/TSPGraph.java:138
↓ 5 callersMethodparseGenes
For each gene in the genome create an expression tree from the Karva expression encoded in the gene. The expression tree is used to evaluate the expre
contrib/gep/ec/gep/GEPChromosome.java:545
↓ 5 callersMethodpop
Pops off <i>n</i> items from the stack, if possible. Returns the number of items actually popped off.
ecj/src/main/java/ec/gp/ADFStack.java:185
↓ 5 callersMethodpostEvaluationStatistics
(final EvolutionState state)
ecj/src/main/java/ec/simple/SimpleStatistics.java:149
↓ 5 callersMethodreadDoubleWithPreamble
Finds the next nonblank line, skips past an expected preamble, and reads in a double if there is one, and returns it. Generates an error othe
ecj/src/main/java/ec/util/Code.java:739
↓ 5 callersMethodreadFitness
(final EvolutionState state, final LineNumberReader reader)
ecj/src/main/java/ec/gp/koza/KozaFitness.java:152
↓ 5 callersMethodreadTrials
Reads trials in from DataInput.
ecj/src/main/java/ec/Fitness.java:312
↓ 5 callersMethodrepOK
()
ecj/src/main/java/ec/app/tsp/TSPGraph.java:279
↓ 5 callersMethodrootParent
Returns the root ancestor of this node. O(ln n) average case, O(n) worst case.
ecj/src/main/java/ec/gp/GPNode.java:593
↓ 5 callersMethodrun
Starts the run. <i>condition</i> indicates whether or not the run was restarted from a checkpoint (C_STARTED_FRESH vs C_STARTED_FROM
ecj/src/main/java/ec/EvolutionState.java:467
↓ 5 callersMethodrunComplete
Always returns null
ecj/src/main/java/ec/simple/SimpleExchanger.java:77
↓ 5 callersMethodsetup
(final EvolutionState state, final Parameter base)
ecj/src/main/java/ec/co/ant/SimpleConstructionRule.java:30
↓ 5 callersMethodsetupGenome
(final EvolutionState state, final Parameter base)
ecj/src/main/java/ec/vector/VectorSpecies.java:264
↓ 5 callersMethodsplit
Splits the genome into n pieces, according to points, which must be sorted. pieces.length must be 1 + points.length. The default form does n
ecj/src/main/java/ec/vector/VectorIndividual.java:137
↓ 5 callersMethodtoString
()
contrib/cgp/ec/cgp/representation/VectorSpeciesCGP.java:259
↓ 5 callersMethodtoString
()
ecj/src/main/java/ec/gp/ge/GrammarNode.java:35
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