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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 60 callersFunctionclose
deps/seqan-library-2.0.0/include/seqan/misc/svg.h:189
↓ 60 callersFunctiongetTarget
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:584
↓ 60 callersFunctionhost
deps/seqan-library-2.0.0/include/seqan/index/find_index.h:98
↓ 59 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/basic/iterator_range.h:231
↓ 59 callersFunctionwrite
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:504
↓ 58 callersFunctionSEQAN_ASSERT_GT
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2555
↓ 58 callersMethodsize
<b>Effects</b>: Returns the number of the elements contained in the list. <b>Throws</b>: Nothing. <b>Complexity</b>: Linear to the number of element
deps/boost/boost/intrusive/slist.hpp:692
↓ 58 callersFunctionswap
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:572
↓ 58 callersMethodwhat
deps/boost/libs/exception/example/example_io.cpp:37
↓ 57 callersFunctionTIterator
deps/seqan-library-2.0.0/include/seqan/basic/iterator_adaptor.h:189
↓ 57 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/index/index_fm.h:237
↓ 57 callersMethodreserve
deps/boost/boost/unordered/unordered_map.hpp:1797
↓ 56 callersFunctionSEQAN_ASSERT_LEQ
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2504
↓ 56 callersMethodfront
front() and back()
deps/boost/boost/array.hpp:131
↓ 56 callersFunctionopen
deps/seqan-library-2.0.0/include/seqan/misc/svg.h:181
↓ 56 callersMethodpriv_addr
deps/boost/boost/container/string.hpp:366
↓ 56 callersFunctionskipLine
deps/seqan-library-2.0.0/include/seqan/stream/tokenization.h:437
↓ 56 callersFunctionstringSet
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:1171
↓ 55 callersFunction_scoreOfCell
deps/seqan-library-2.0.0/include/seqan/align/dp_cell.h:139
↓ 55 callersMethodappend_state
deps/boost/boost/regex/v4/basic_regex_creator.hpp:291
↓ 55 callersMethodfind
deps/seqan-library-2.0.0/include/seqan/find/find_wumanber.h:232
↓ 55 callersFunctionhash
deps/seqan-library-2.0.0/include/seqan/index/shape_gapped.h:428
↓ 55 callersFunctionput
deps/boost/boost/format/feed_args.hpp:154
↓ 55 callersMethodstart
* Start the stopwatch. * * Effects: Memorize the current time. * * Post-conditions: is_running(). */
deps/boost/boost/chrono/stopwatches/stopwatch.hpp:229
↓ 54 callersFunctionassignValue
deps/seqan-library-2.0.0/include/seqan/map/sumlist_skip.h:914
↓ 54 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix.h:550
↓ 54 callersFunctiongetValueI2
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:298
↓ 54 callersFunctionis_symlink
deps/boost/boost/filesystem/operations.hpp:325
↓ 54 callersMethodkey_comp
deps/boost/boost/intrusive/bstree.hpp:320
↓ 54 callersFunctionoperator=
deps/boost/boost/filesystem/path.hpp:201
↓ 54 callersMethodrun
deps/boost/libs/program_options/src/cmdline.cpp:203
↓ 54 callersFunctionstringSetLimits
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:386
↓ 54 callersMethodswap
deps/boost/boost/smart_ptr/weak_ptr.hpp:202
↓ 53 callersFunctioncurrent_path
deps/boost/libs/filesystem/src/operations.cpp:1188
↓ 53 callersMethodget
Returns a reference to the value if this is initialized, otherwise, the behaviour is UNDEFINED No-throw
deps/boost/boost/optional/detail/old_optional_implementation.hpp:905
↓ 53 callersFunctiongetValue
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_iterator_bfs.h:189
↓ 53 callersMethodlength
deps/boost/libs/regex/src/icu.cpp:87
↓ 53 callersMethodvalue
deps/boost/boost/bind/bind.hpp:122
↓ 53 callersFunctionwriteValue
deps/seqan-library-2.0.0/include/seqan/stream/adapt_ios.h:301
↓ 52 callersFunctionassign
deps/boost/boost/filesystem/operations.hpp:788
↓ 52 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/misc/set.h:334
↓ 52 callersMethodback
deps/boost/boost/range/iterator_range_core.hpp:320
↓ 52 callersMethoddata
deps/boost/libs/locale/src/shared/generator.cpp:21
↓ 52 callersMethodget
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2696
↓ 52 callersFunctiontype
modifiers
deps/boost/boost/filesystem/operations.hpp:298
↓ 51 callersFunctionValuesIn
tests/gtest/gtest.h:15874
↓ 51 callersFunctionValuesIn
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:15874
↓ 51 callersMethodapply
deps/boost/boost/locale/formatting.hpp:496
↓ 51 callersFunctionfile_status
deps/boost/boost/filesystem/operations.hpp:260
↓ 51 callersFunctionfirst_finder
deps/boost/boost/algorithm/string/finder.hpp:50
↓ 51 callersFunctionlock_error
deps/boost/boost/thread/exceptions.hpp:103
↓ 51 callersFunctionlog
deps/seqan-library-2.0.0/include/seqan/basic/math_log_space_value.h:91
↓ 51 callersMethodstop
deps/boost/libs/timer/src/cpu_timer.cpp:195
↓ 51 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:824
↓ 50 callersFunctionbeginPositionV
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_simple.h:223
↓ 50 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:686
↓ 50 callersMethodclear
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2558
↓ 50 callersFunctioncopy
<b>Requires</b>: pos <= size() <b>Effects</b>: Determines the effective length rlen of the string to copy as the smaller of n and size() - pos. s sha
deps/boost/boost/container/string.hpp:2164
↓ 50 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/misc/dequeue.h:149
↓ 50 callersMethodimbue
deps/boost/libs/locale/src/shared/format.cpp:45
↓ 50 callersMethodval
deps/jellyfish-2.2.0/unit_tests/test_hash_counter.cc:54
↓ 49 callersFunctionSWIG_croak_null
deps/jellyfish-2.2.0/swig/perl5/swig_wrap.cpp:1023
↓ 49 callersFunctionabsolute
deps/boost/libs/filesystem/src/operations.cpp:828
↓ 49 callersFunctionbeginPositionH
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_simple.h:179
↓ 49 callersFunctioncheck_value
deps/boost/libs/program_options/test/split_test.cpp:21
↓ 49 callersFunctionduration
deps/boost/boost/chrono/duration.hpp:440
↓ 49 callersFunctionendPositionV
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_simple.h:245
↓ 49 callersFunctionfree
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:60
↓ 49 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h:497
↓ 48 callersMethodfind
deps/boost/boost/unordered/unordered_map.hpp:1664
↓ 48 callersFunctiontargetVertex
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:667
↓ 47 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/bam_io/bam_header_record.h:222
↓ 47 callersFunctioncnull
deps/boost/boost/tuple/detail/tuple_basic.hpp:57
↓ 47 callersFunctionconst_formatter
deps/boost/boost/algorithm/string/formatter.hpp:46
↓ 47 callersMethodflush
deps/boost/boost/interprocess/mapped_region.hpp:505
↓ 47 callersFunctiongoFurther
deps/seqan-library-2.0.0/include/seqan/stream/iter_stream.h:658
↓ 47 callersFunctionis_regular_file
deps/boost/boost/filesystem/operations.hpp:321
↓ 47 callersFunctionprior
deps/boost/boost/next_prior.hpp:185
↓ 47 callersFunctionref_compare
deps/boost/boost/bind/bind.hpp:87
↓ 47 callersMethodreset
Set new value to pointer, previous object is destroyed, ownership on new object is transferred
deps/boost/boost/locale/hold_ptr.hpp:73
↓ 47 callersMethodstr
deps/boost/boost/regex/v4/sub_match.hpp:71
↓ 46 callersMethodbegin
0-copy access :
deps/boost/boost/format/alt_sstream.hpp:155
↓ 46 callersMethodclose
deps/boost/libs/regex/src/fileiter.cpp:137
↓ 46 callersFunctioninterlocked_read_acquire
deps/boost/boost/thread/win32/interlocked_read.hpp:44
↓ 46 callersFunctioniterator_to_raw_pointer
deps/boost/boost/move/detail/iterator_to_raw_pointer.hpp:49
↓ 46 callersMethodkey_len
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:69
↓ 46 callersFunctionlower_bound
deps/boost/boost/container/detail/tree.hpp:1251
↓ 46 callersFunctionscoreGapExtend
deps/seqan-library-2.0.0/include/seqan/score/score_edit.h:109
↓ 46 callersFunctionsetLength
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix.h:562
↓ 45 callersFunctionMessage
Copy constructor.
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:3168
↓ 45 callersMethodadd
lib/src/comp_counters.cc:223
↓ 45 callersMethodat_impl
deps/boost/boost/fusion/container/vector/detail/cpp03/preprocessed/vector10.hpp:185
↓ 45 callersMethodcapacity
deps/jellyfish-2.2.0/include/jellyfish/mer_heap.hpp:102
↓ 45 callersFunctionindexRequire
deps/seqan-library-2.0.0/include/seqan/index/index_view.h:588
↓ 45 callersFunctionremove
deps/boost/libs/filesystem/src/operations.cpp:1665
↓ 45 callersMethodsize
deps/jellyfish-2.2.0/include/jellyfish/mer_heap.hpp:101
↓ 45 callersFunctionsort
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_algorithms.h:389
↓ 45 callersFunctionupper_bound
deps/boost/boost/container/detail/tree.hpp:1257
↓ 44 callersFunctionT
deps/boost/boost/core/addressof.hpp:156
↓ 44 callersMethodbegin
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:3018
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