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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 97 callersMethodsize
Returns the number of TestPartResult objects in the array.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:9457
↓ 96 callersMethodlexically_normal
deps/boost/libs/filesystem/src/path.cpp:416
↓ 96 callersMethodsize
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:797
↓ 95 callersMethodnormalize
deps/boost/libs/locale/src/icu/date_time.cpp:144
↓ 95 callersMethodparent_path
deps/boost/libs/filesystem/src/path.cpp:340
↓ 94 callersFunctioncall
deps/boost/boost/bind/mem_fn_template.hpp:33
↓ 94 callersMethoddata
deps/boost/boost/range/adaptor/replaced.hpp:56
↓ 94 callersFunctionsource
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_base.h:430
↓ 92 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:459
↓ 90 callersMethodadd_options
deps/boost/libs/program_options/src/options_description.cpp:305
↓ 90 callersMethodget
deps/boost/boost/smart_ptr/allocate_shared_array.hpp:555
↓ 89 callersFunctionassignProperty
deps/seqan-library-2.0.0/include/seqan/graph_types/property_map_generic.h:184
↓ 89 callersFunctionposition
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:782
↓ 89 callersFunctionskipUntil
deps/seqan-library-2.0.0/include/seqan/stream/tokenization.h:204
↓ 87 callersFunctiongoNext
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align_adapt.h:192
↓ 87 callersFunctionignoreUnusedVariableWarning
deps/seqan-library-2.0.0/include/seqan/basic/concept_checking.h:514
↓ 86 callersFunction_max
deps/seqan-library-2.0.0/include/seqan/basic/math_functions.h:182
↓ 86 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_iterator_bfs.h:238
↓ 85 callersMethodgetloc
deps/boost/boost/regex/v4/basic_regex.hpp:465
↓ 85 callersFunctionmemset
deps/seqan-library-2.0.0/include/seqan/misc/memset.h:142
↓ 84 callersMethodeach
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:2225
↓ 84 callersMethodget
Get a const pointer to the object
deps/boost/boost/locale/hold_ptr.hpp:42
↓ 84 callersFunctionproperty
deps/seqan-library-2.0.0/include/seqan/graph_types/property_map_generic.h:196
↓ 83 callersFunctionRuby_Format_TypeError
This function is called when a user inputs a wrong argument to a method. */
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:1095
↓ 83 callersFunctionreport_errors
deps/boost/boost/core/lightweight_test.hpp:406
↓ 83 callersFunctionresize
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix.h:596
↓ 83 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/map/map_vector.h:447
↓ 82 callersFunctioniter
deps/seqan-library-2.0.0/include/seqan/align/align_cols.h:233
↓ 81 callersMethodbegin
deps/boost/boost/container/detail/multiallocation_chain.hpp:109
↓ 81 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:603
↓ 81 callersFunctionk
(q)
deps/boost/libs/locale/doc/html/jquery.js:71
↓ 80 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/bam_io/bam_tags_dict.h:361
↓ 79 callersMethodfilename
deps/boost/libs/filesystem/src/path.cpp:348
↓ 79 callersFunctiontest_to
deps/boost/libs/locale/test/test_utf.cpp:69
↓ 78 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align_adapt.h:171
↓ 78 callersMethoderase
deps/boost/boost/unordered/unordered_map.hpp:1559
↓ 78 callersMethodname
deps/boost/libs/thread/src/future.cpp:27
↓ 77 callersMethodtype
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2059
↓ 76 callersFunctionb
(e)
deps/boost/libs/locale/doc/html/jquery.js:41
↓ 76 callersMethodcount
deps/boost/boost/unordered/unordered_map.hpp:1700
↓ 76 callersFunctionget
deps/boost/boost/tuple/tuple.hpp:45
↓ 76 callersFunctiongoNext
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_iterator_bfs.h:254
↓ 75 callersFunctiongetValueI1
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:280
↓ 75 callersFunctionstringSetLimits
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1310
↓ 75 callersMethodtime_since_epoch
deps/boost/boost/chrono/time_point.hpp:180
↓ 74 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix.h:655
↓ 74 callersFunctioninfix
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:579
↓ 74 callersMethodsize
Returns the number of TestPartResult objects in the array.
tests/gtest/src/gtest-all.cc:9457
↓ 74 callersFunctiontargetVertex
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:460
↓ 73 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:260
↓ 73 callersFunctionequal
deps/boost/libs/locale/test/test_std_formatting.cpp:37
↓ 73 callersFunctiongetNextT
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:825
↓ 73 callersFunctionindexText
deps/seqan-library-2.0.0/include/seqan/index/index_pizzachili.h:221
↓ 73 callersMethodpath
deps/jellyfish-2.2.0/include/jellyfish/mapped_file.hpp:123
↓ 72 callersFunctionappend
deps/seqan-library-2.0.0/include/seqan/arg_parse/tool_doc.h:722
↓ 72 callersMethodend
deps/boost/boost/container/detail/multiallocation_chain.hpp:112
↓ 72 callersFunctiongetValue
deps/seqan-library-2.0.0/include/seqan/map/sumlist_skip.h:771
↓ 72 callersFunctionglobal
deps/boost/libs/locale/src/shared/date_time.cpp:445
↓ 72 callersFunctionsequenceEntryForScore
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:285
↓ 71 callersFunctionis_directory
deps/boost/boost/filesystem/operations.hpp:323
↓ 71 callersFunctionwriteValue
deps/seqan-library-2.0.0/include/seqan/basic/basic_stream.h:695
↓ 70 callersFunctionappendValue
deps/seqan-library-2.0.0/include/seqan/index/index_fm_rank_dictionary_naive.h:182
↓ 70 callersFunctionhours
Returns number of hours in the duration
deps/boost/boost/date_time/time_duration.hpp:88
↓ 70 callersMethodsize
deps/boost/boost/format/alt_sstream.hpp:157
↓ 69 callersMethodcall
deps/boost/boost/regex/v4/protected_call.hpp:62
↓ 69 callersFunctiongetValue
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1379
↓ 68 callersFunctionSEQAN_ASSERT_NOT
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2589
↓ 68 callersFunctionpush
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:1164
↓ 68 callersFunctionto_raw_pointer
deps/boost/boost/move/detail/to_raw_pointer.hpp:32
↓ 67 callersMethodassign
deps/boost/boost/container/vector.hpp:1124
↓ 67 callersFunctionerror
deps/boost/libs/filesystem/src/operations.cpp:278
↓ 67 callersFunctionisGap
deps/seqan-library-2.0.0/include/seqan/align/gaps_base.h:387
↓ 67 callersMethodpush_back
Unlike the corresponding method on list or deqeue, push_back may fail if full() is true. Then false is returned.
deps/jellyfish-2.2.0/include/jellyfish/simple_circular_buffer.hpp:59
↓ 66 callersFunctionaddVertex
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:303
↓ 66 callersFunctiondecay_copy
deps/boost/boost/thread/detail/move.hpp:354
↓ 66 callersFunctiong
deps/boost/libs/exception/example/logging.cpp:13
↓ 66 callersFunctiongetSeqNo
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:416
↓ 66 callersFunctiongetValue
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align_adapt.h:131
↓ 66 callersFunctionneedle
deps/seqan-library-2.0.0/include/seqan/find/find_shiftor.h:184
↓ 65 callersFunctionSEQAN_ASSERT_GEQ
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2538
↓ 65 callersFunctionaddEdge
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:390
↓ 65 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/sequence/string_array.h:190
↓ 65 callersFunctionc
(g,e)
deps/boost/libs/locale/doc/html/jquery.js:41
↓ 65 callersMethodget
retrieving the value
deps/boost/boost/thread/future.hpp:2185
↓ 65 callersFunctionresize
deps/seqan-library-2.0.0/include/seqan/system/file_sync.h:421
↓ 65 callersFunctionstore
First, performs semantic actions for 'oa'. Then, stores in 'm' all options that are defined in 'desc'.
deps/boost/libs/program_options/src/variables_map.cpp:22
↓ 64 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:992
↓ 64 callersFunctioncargo
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:463
↓ 64 callersMethodget
deps/boost/boost/regex/v4/mem_block_cache.hpp:52
↓ 63 callersFunctionSEQAN_ASSERT_LT
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2521
↓ 63 callersMethodbegin
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_base.h:745
↓ 63 callersMethodheader_ptr
deps/boost/boost/intrusive/bstree.hpp:130
↓ 63 callersMethodsize
deps/boost/boost/algorithm/string/detail/util.hpp:60
↓ 63 callersFunctionstatus
deps/boost/boost/filesystem/operations.hpp:435
↓ 62 callersFunctiongetSeqOffset
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:461
↓ 62 callersFunctioninit_from_sequence
deps/boost/boost/fusion/container/vector/detail/cpp03/vector_n.hpp:138
↓ 62 callersFunctionpositionToId
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_owner.h:307
↓ 62 callersMethodreset
deps/boost/libs/algorithm/minmax/test/minmax_test.cpp:42
↓ 61 callersFunctionwrite
deps/seqan-library-2.0.0/include/seqan/store/store_io.h:630
↓ 60 callersFunctionaddressof
deps/boost/boost/core/addressof.hpp:37
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