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github.com/EarlhamInst/KAT
/ functions
Functions
22,481 in github.com/EarlhamInst/KAT
⨍
Functions
22,481
◇
Types & classes
25,829
↓ 6 callers
Method
generate
deps/boost/libs/locale/src/shared/generator.cpp:112
↓ 6 callers
Function
get
tests/gtest/gtest.h:1570
↓ 6 callers
Method
get
deps/boost/boost/chrono/io/duration_get.hpp:176
↓ 6 callers
Method
get
deps/boost/boost/regex/pending/object_cache.hpp:61
↓ 6 callers
Function
getCharacter
deps/seqan-library-2.0.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h:254
↓ 6 callers
Function
getChunk
deps/seqan-library-2.0.0/include/seqan/stream/iter_stream.h:535
↓ 6 callers
Method
getComment
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:3001
↓ 6 callers
Function
getEndState
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:731
↓ 6 callers
Function
getObjectId
deps/seqan-library-2.0.0/include/seqan/sequence/segment_base.h:429
↓ 6 callers
Method
get_deleter
deps/boost/boost/smart_ptr/shared_ptr.hpp:1034
↓ 6 callers
Function
get_duration_style
deps/boost/boost/chrono/io/ios_base_state.hpp:67
↓ 6 callers
Method
get_id
deps/boost/boost/thread/detail/thread.hpp:748
↓ 6 callers
Method
get_named_subs
deps/boost/boost/regex/v4/basic_regex.hpp:631
↓ 6 callers
Method
get_ostream
@brief returns a reference to the output stream
deps/seqan-library-2.0.0/include/seqan/stream/zipstream/zipstream.h:128
↓ 6 callers
Function
glowEffect
(n,duration)
deps/boost/libs/locale/doc/html/navtree.js:310
↓ 6 callers
Function
goEnd
deps/seqan-library-2.0.0/include/seqan/misc/edit_environment.h:743
↓ 6 callers
Function
goRight
deps/seqan-library-2.0.0/include/seqan/store/store_annotation.h:789
↓ 6 callers
Function
h
(j)
deps/boost/libs/locale/doc/html/jquery.js:62
↓ 6 callers
Method
has_date_sep_chars
The ios standard format doesn't use char separators
deps/boost/boost/date_time/iso_format.hpp:280
↓ 6 callers
Function
hash_combine
deps/boost/boost/functional/hash/hash.hpp:334
↓ 6 callers
Function
hash_value_from_capture_name
deps/boost/boost/regex/v4/basic_regex.hpp:68
↓ 6 callers
Method
head
The following 3 should only be used after fill has been called
deps/jellyfish-2.2.0/include/jellyfish/mer_heap.hpp:105
↓ 6 callers
Method
implicit_value
Specifies an implicit value, which will be used if the option is given, but without an adjacent value. Using this implies that
deps/boost/boost/program_options/value_semantic.hpp:223
↓ 6 callers
Function
in
deps/seqan-library-2.0.0/include/seqan/misc/set.h:266
↓ 6 callers
Method
index
member functions index(), value() (non-const and const)
deps/boost/boost/range/adaptor/indexed.hpp:94
↓ 6 callers
Function
infixWithLength
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:669
↓ 6 callers
Method
initial_state
deps/boost/boost/locale/utf8_codecvt.hpp:38
↓ 6 callers
Function
invalid_utf32_code_point
deps/boost/boost/regex/pending/unicode_iterator.hpp:123
↓ 6 callers
Method
invalidate
deps/boost/boost/thread/future.hpp:220
↓ 6 callers
Function
isClipped
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_base.h:493
↓ 6 callers
Function
isGap
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_array.h:155
↓ 6 callers
Function
isGapExtension
deps/seqan-library-2.0.0/include/seqan/align/dp_cell_dynamic.h:167
↓ 6 callers
Function
isInputPrefixArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:438
↓ 6 callers
Function
isNotEqual
deps/seqan-library-2.0.0/include/seqan/sequence/sequence_lexical.h:415
↓ 6 callers
Method
isObject
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2970
↓ 6 callers
Function
isOutputPrefixArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:417
↓ 6 callers
Function
isRightTerminal
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2517
↓ 6 callers
Function
is_empty
deps/boost/libs/filesystem/src/operations.cpp:1402
↓ 6 callers
Function
is_header
@copydoc ::boost::intrusive::bstree_algorithms::is_header
deps/boost/boost/intrusive/rbtree_algorithms.hpp:438
↓ 6 callers
Method
is_initialized
deps/boost/boost/optional/detail/optional_trivially_copyable_base.hpp:143
↓ 6 callers
Function
is_locked_by_this_thread
deps/boost/boost/thread/is_locked_by_this_thread.hpp:26
↓ 6 callers
Function
knuth_morris_pratt_search
deps/boost/boost/algorithm/searching/knuth_morris_pratt.hpp:209
↓ 6 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_sampler.h:335
↓ 6 callers
Method
less
deps/boost/boost/container/detail/iterators.hpp:475
↓ 6 callers
Function
less_pointees
deps/boost/boost/utility/compare_pointees.hpp:56
↓ 6 callers
Function
less_than
deps/boost/boost/range/iterator_range_core.hpp:80
↓ 6 callers
Function
lexicalCastWithException
deps/seqan-library-2.0.0/include/seqan/stream/lexical_cast.h:279
↓ 6 callers
Function
lexicographical_compare
std::lexicographical_compare would infinately recurse because path iterators yield paths, so provide a path aware version
deps/boost/boost/filesystem/path.hpp:755
↓ 6 callers
Function
lower_bound
deps/boost/boost/move/algo/detail/merge.hpp:109
↓ 6 callers
Method
lsize
deps/jellyfish-2.2.0/include/jellyfish/large_hash_array.hpp:202
↓ 6 callers
Function
make_error_code
deps/boost/libs/system/test/error_code_user_test.cpp:94
↓ 6 callers
Function
make_filter_iterator
deps/boost/boost/iterator/filter_iterator.hpp:111
↓ 6 callers
Method
manager
Function pointers
deps/boost/boost/function/function_base.hpp:321
↓ 6 callers
Method
map
deps/jellyfish-2.2.0/include/jellyfish/mapped_file.hpp:85
↓ 6 callers
Method
min
deps/jellyfish-2.2.0/include/jellyfish/dumper.hpp:87
↓ 6 callers
Function
needed_keys_count
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:518
↓ 6 callers
Function
nodePredicate
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:1477
↓ 6 callers
Method
one_file
deps/jellyfish-2.2.0/include/jellyfish/dumper.hpp:83
↓ 6 callers
Function
open_file
deps/boost/libs/exception/example/errinfos.cpp:28
↓ 6 callers
Function
opt_min_count
deps/boost/libs/algorithm/minmax/example/minmax_timer.cpp:42
↓ 6 callers
Method
pathString
lib/src/input_handler.cc:160
↓ 6 callers
Function
permissions
deps/boost/libs/filesystem/src/operations.cpp:1501
↓ 6 callers
Method
plot
(self, xmax, ymax, title=None, to_screen=True, output_file=None)
scripts/kat/spectra.py:211
↓ 6 callers
Method
printMatrix
lib/include/kat/sparse_matrix.hpp:251
↓ 6 callers
Method
priv_end_addr
deps/boost/boost/container/string.hpp:374
↓ 6 callers
Function
put_string
deps/boost/boost/date_time/date_names_put.hpp:174
↓ 6 callers
Function
quote_arg
deps/jellyfish-2.2.0/lib/misc.cc:85
↓ 6 callers
Function
range_finder
deps/boost/boost/algorithm/string/finder.hpp:237
↓ 6 callers
Method
rbegin
deps/boost/boost/filesystem/path.hpp:857
↓ 6 callers
Method
read
deps/boost/boost/chrono/process_cpu_clocks.hpp:191
↓ 6 callers
Function
readBucket
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:890
↓ 6 callers
Function
readRecord
deps/seqan-library-2.0.0/include/seqan/bam_io/read_bam.h:192
↓ 6 callers
Function
rebalance_after_erasure
deps/boost/boost/intrusive/avltree_algorithms.hpp:485
↓ 6 callers
Function
reduce
deps/boost/boost/chrono/io_v1/chrono_io.hpp:238
↓ 6 callers
Function
regex_formatter
deps/boost/boost/algorithm/string/regex_find_format.hpp:70
↓ 6 callers
Function
releaseFilePage
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:783
↓ 6 callers
Function
removeOutEdges
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:438
↓ 6 callers
Function
repLength
deps/seqan-library-2.0.0/include/seqan/index/index_qgram_bucketrefinement.h:561
↓ 6 callers
Function
replace
deps/boost/boost/range/adaptor/replaced.hpp:143
↓ 6 callers
Method
report
deps/boost/libs/timer/src/cpu_timer.cpp:240
↓ 6 callers
Method
resize_and_add_node_unique
deps/boost/boost/unordered/detail/implementation.hpp:3574
↓ 6 callers
Function
run
deps/boost/boost/thread/future.hpp:2948
↓ 6 callers
Function
scoreGapOpenHorizontal
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:355
↓ 6 callers
Function
scoreGapOpenVertical
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:373
↓ 6 callers
Method
seconds
deps/boost/libs/chrono/example/await_keystroke.cpp:29
↓ 6 callers
Function
seek
deps/seqan-library-2.0.0/include/seqan/file/file_cstyle.h:158
↓ 6 callers
Function
separator
deps/boost/boost/regex/v4/fileiter.hpp:405
↓ 6 callers
Method
set
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:2599
↓ 6 callers
Function
setDimension
deps/seqan-library-2.0.0/include/seqan/align/matrix_base.h:392
↓ 6 callers
Function
setHost
deps/seqan-library-2.0.0/include/seqan/find/find_pex.h:208
↓ 6 callers
Function
setLength
deps/seqan-library-2.0.0/include/seqan/index/find_backtracking.h:337
↓ 6 callers
Function
setSource
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:396
↓ 6 callers
Function
setState
deps/seqan-library-2.0.0/include/seqan/index/find_backtracking.h:319
↓ 6 callers
Method
set_base
deps/boost/boost/regex/v4/match_results.hpp:515
↓ 6 callers
Method
set_value_deferred
deps/boost/boost/thread/future.hpp:773
↓ 6 callers
Function
shareResources
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:403
↓ 6 callers
Function
shl_signed
deps/boost/boost/lexical_cast/detail/converter_lexical_streams.hpp:258
↓ 6 callers
Function
shl_unsigned
deps/boost/boost/lexical_cast/detail/converter_lexical_streams.hpp:250
↓ 6 callers
Method
size
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:372
↓ 6 callers
Method
size
deps/boost/boost/thread/detail/thread_group.hpp:137
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